Non-Coding RNA Search

Ss1.1-rpigca0_007374.5

Sequence:


               
               GTTATAACAACAAAAATACATCATATGGTGATCAAAATCCTGCAGATTACAGTCCTTTCT
AATTATGTTTGAAACCCAAACATGAAAATTAGAATCCTTTTACACACACTATGACAGCTT
TCCATCAGCCTTACCGTGACATTTTGTATTGTGTTCTCTGCAGCCACCGAAGAGCCTTGA
TAGAGAAGGAAAGAGACAGAGGGTGAGAAAGAAAGGGATATGCCAAATGACAGTCTTTTG
AATAGTGTAAGTTCAATCCCTAAAACAAAAAGCTCGGTCTTTTTTTCCTCTAAATAATGT
GCTCTCCAGCTTCACCTCTCATCCTGCGAAACATGAAAGGGAAAGTAAAAGAGGTGACCC
AAATCACAGAGAGCCTTTGATAGGAGAAATTCAGCTGTTTTGAACACTTACAATCAAAGG
AAGTGGTTTCCCTAATTACATGAACTATGTGAAATCTCTCAGAATAGCTCTTCCACCCCA
GGATTCCTTGCACTTTAGAAGTTTGCATAAAAAGCTCACATGGAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTATAACAACAAAAATACATCATATGGTGATCAAAATCCTGCAGATTACAGTCCTTTCT
AATTATGTTTGAAACCCAAACATGAAAATTAGAATCCTTTTACACACACTATGACAGCTT
TCCATCAGCCTTACCGTGACATTTTGTATTGTGTTCTCTGCAGCCACCGAAGAGCCTTGA
TAGAGAAGGAAAGAGACAGAGGGTGAGAAAGAAAGGGATATGCCAAATGACAGTCTTTTG
AATAGTGTAAGTTCAATCCCTAAAACAAAAAGCTCGGTCTTTTTTTCCTCTAAATAATGT
GCTCTCCAGCTTCACCTCTCATCCTGCGAAACATGAAAGGGAAAGTAAAAGAGGTGACCC
AAATCACAGAGAGCCTTTGATAGGAGAAATTCAGCTGTTTTGAACACTTACAATCAAAGG
AAGTGGTTTCCCTAATTACATGAACTATGTGAAATCTCTCAGAATAGCTCTTCCACCCCA
GGATTCCTTGCACTTTAGAAGTTTGCATAAAAAGCTCACATGGAGAAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               283-401, - strand, RNAz p=0.669602
               

               
               346-465, + strand, RNAz p=0.724852

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-401, - strand, RNAz p=0.669602
               

               
               346-465, + strand, RNAz p=0.724852

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               68-528, gnl|bosTau2|chr2 (15471466-15471012)
               

               
               68-528, gnl|canFam2|chr36 (20413071-20413372)
               

               
               68-528, gnl|echTel1|scaffold_321917 (113932-114216)
               

               
               68-528, gnl|galGal2|chr7 (18219606-18219283)
               

               
               68-528, gnl|hg17|chr2 (173826618-173826927)
               

               
               68-528, gnl|Hg17|chr2 (173826617-173827075)
               

               
               68-528, gnl|loxAfr1|scaffold_556 (24010-24308)
               

               
               68-528, gnl|mm7|chr2 (72175722-72176030)
               

               
               68-528, gnl|Mm7|chr2 (72175725-72176178)
               

               
               68-528, gnl|monDom2|scaffold_2 (72310410-72310729)
               

               
               68-528, gnl|oryCun1|scaffold_110801 (9397-9706)
               

               
               68-528, gnl|panTro1|chr13 (63467718-63468027)
               

               
               68-528, gnl|rheMac2|chr12 (36764420-36764729)
               

               
               68-528, gnl|rn3|chr3 (54697489-54697794)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-528, gnl|bosTau2|chr2 (15471466-15471012)
               

               
               68-528, gnl|canFam2|chr36 (20413071-20413372)
               

               
               68-528, gnl|echTel1|scaffold_321917 (113932-114216)
               

               
               68-528, gnl|galGal2|chr7 (18219606-18219283)
               

               
               68-528, gnl|hg17|chr2 (173826618-173826927)
               

               
               68-528, gnl|Hg17|chr2 (173826617-173827075)
               

               
               68-528, gnl|loxAfr1|scaffold_556 (24010-24308)
               

               
               68-528, gnl|mm7|chr2 (72175722-72176030)
               

               
               68-528, gnl|Mm7|chr2 (72175725-72176178)
               

               
               68-528, gnl|monDom2|scaffold_2 (72310410-72310729)
               

               
               68-528, gnl|oryCun1|scaffold_110801 (9397-9706)
               

               
               68-528, gnl|panTro1|chr13 (63467718-63468027)
               

               
               68-528, gnl|rheMac2|chr12 (36764420-36764729)
               

               
               68-528, gnl|rn3|chr3 (54697489-54697794)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.239292)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)

	283-401, - strand, RNAz p=0.669602
	346-465, + strand, RNAz p=0.724852

	68-528, gnl\|bosTau2\|chr2 (15471466-15471012)
	68-528, gnl\|canFam2\|chr36 (20413071-20413372)
	68-528, gnl\|echTel1\|scaffold_321917 (113932-114216)
	68-528, gnl\|galGal2\|chr7 (18219606-18219283)
	68-528, gnl\|hg17\|chr2 (173826618-173826927)
	68-528, gnl\|Hg17\|chr2 (173826617-173827075)
	68-528, gnl\|loxAfr1\|scaffold_556 (24010-24308)
	68-528, gnl\|mm7\|chr2 (72175722-72176030)
	68-528, gnl\|Mm7\|chr2 (72175725-72176178)
	68-528, gnl\|monDom2\|scaffold_2 (72310410-72310729)
	68-528, gnl\|oryCun1\|scaffold_110801 (9397-9706)
	68-528, gnl\|panTro1\|chr13 (63467718-63468027)
	68-528, gnl\|rheMac2\|chr12 (36764420-36764729)
	68-528, gnl\|rn3\|chr3 (54697489-54697794)