Non-Coding RNA Search

Ss1.1-rpigca0_007651.5

Sequence:


               
               AATTTAGTGACTTGATTTCTTCACTCCTCCTGAATGTACAAATGCAGTTGATCATGGGAT
CCCTTTGAAAAACAAACAAGCAGCAGGGAGATAACATAAAAAACCCAACAGAAAACATTT
CACCATCTGAGGTCTGAAGTCACAAATCTTTATAACTCTGATAAAACAAAGGGGATATCA
ATAGTACTTGAAGAAGAGGAGCGTTTTATAACATGCTTAATTTATTTATTATGATAACCA
CAATTTACAAAAGAAGCACTCAGGATTTTGTTTTAAAATGTTTCTCTCTATGGCTCCCAT
TTTGTTCTGTGAATAATTATTTATGAATTTCATACTGACACAAATCCTCACTAGTTGACA
GCTCCATTTAAGTGAGTTTCAAGATCAGTTTCAAATAGACTTTTAAATTGCCGTTAAGTT
CTTAATATTAAACCATTTCTATGCTACCTTAAAGCTAGCTAGGCTTTCCTTTACTTTAAT
TAGTAAGCCAATCAGAAGACTACAATCAGTGAATATTTAACAAATGTGATGAAGGGGTTT
AATTTAATAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTAGTGACTTGATTTCTTCACTCCTCCTGAATGTACAAATGCAGTTGATCATGGGAT
CCCTTTGAAAAACAAACAAGCAGCAGGGAGATAACATAAAAAACCCAACAGAAAACATTT
CACCATCTGAGGTCTGAAGTCACAAATCTTTATAACTCTGATAAAACAAAGGGGATATCA
ATAGTACTTGAAGAAGAGGAGCGTTTTATAACATGCTTAATTTATTTATTATGATAACCA
CAATTTACAAAAGAAGCACTCAGGATTTTGTTTTAAAATGTTTCTCTCTATGGCTCCCAT
TTTGTTCTGTGAATAATTATTTATGAATTTCATACTGACACAAATCCTCACTAGTTGACA
GCTCCATTTAAGTGAGTTTCAAGATCAGTTTCAAATAGACTTTTAAATTGCCGTTAAGTT
CTTAATATTAAACCATTTCTATGCTACCTTAAAGCTAGCTAGGCTTTCCTTTACTTTAAT
TAGTAAGCCAATCAGAAGACTACAATCAGTGAATATTTAACAAATGTGATGAAGGGGTTT
AATTTAATAAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-311, + strand, RNAz p=0.554291

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-311, + strand, RNAz p=0.554291

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL832584, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL832584, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-532, gnl|bosTau2|chr10 (39422411-39421873)
               

               
               1-532, gnl|Hg17|chr15 (54171869-54171346)
               

               
               1-532, gnl|Mm7|chr9 (72653750-72654278)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-532, gnl|bosTau2|chr10 (39422411-39421873)
               

               
               1-532, gnl|Hg17|chr15 (54171869-54171346)
               

               
               1-532, gnl|Mm7|chr9 (72653750-72654278)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.837521)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.837521)

	1-532, gnl\|bosTau2\|chr10 (39422411-39421873)
	1-532, gnl\|Hg17\|chr15 (54171869-54171346)
	1-532, gnl\|Mm7\|chr9 (72653750-72654278)