Non-Coding RNA Search

Ss1.1-rpigca0_007773.5

Sequence:


               
               CCCTGGCTGTGCCCCCAGGGCCTCCATTGCCACGCTCAACAAACTCTGTGCCACCAAGTT
CCGAGTGACCCAGCCCGACACTTTCAGCCTCTTCCTGTACAAGGGGCAGGACTACCACCG
CCTGCCCCCCGGAGCCCTGGCCCACCGGCTGCCCACAGCCGGCTACCTCGTCTACCGCCG
GGCAGAGCGGCCTGAGACCCAGGGGGCCTCCCCTGGGGCTGCAGCAGAGGAGGGCAGTGG
GGGGCCAGAGGCAGGGGGCAGAGAGGAAGAGAAAGGGCGAGACGGGGACACCGAGGTCAA
AGCCAGCCCTAGGGACAGCGGGGGAGAGTCTGAGACAGTGGCCGAGGGGGCCGGGCGCCA
GGCCAGGGAGGACCCCACTCAGCCACGGGGACGAGAGGCTGAGGGAAGCCTGGTAGCAGA
GGAGTAGCTGGGAGTGGACAGAAAGGCCGCTTGGGGCAGAAAACTCTGAGCCCGCTGGGA
AGGCCTTTGAGAGCCGTCAGCCCCCTCAGCCTTCCCCACCCCAGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGGCTGTGCCCCCAGGGCCTCCATTGCCACGCTCAACAAACTCTGTGCCACCAAGTT
CCGAGTGACCCAGCCCGACACTTTCAGCCTCTTCCTGTACAAGGGGCAGGACTACCACCG
CCTGCCCCCCGGAGCCCTGGCCCACCGGCTGCCCACAGCCGGCTACCTCGTCTACCGCCG
GGCAGAGCGGCCTGAGACCCAGGGGGCCTCCCCTGGGGCTGCAGCAGAGGAGGGCAGTGG
GGGGCCAGAGGCAGGGGGCAGAGAGGAAGAGAAAGGGCGAGACGGGGACACCGAGGTCAA
AGCCAGCCCTAGGGACAGCGGGGGAGAGTCTGAGACAGTGGCCGAGGGGGCCGGGCGCCA
GGCCAGGGAGGACCCCACTCAGCCACGGGGACGAGAGGCTGAGGGAAGCCTGGTAGCAGA
GGAGTAGCTGGGAGTGGACAGAAAGGCCGCTTGGGGCAGAAAACTCTGAGCCCGCTGGGA
AGGCCTTTGAGAGCCGTCAGCCCCCTCAGCCTTCCCCACCCCAGGCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               81-275, - strand, RNAz p=0.912741
               

               
               315-473, - strand, RNAz p=0.999334

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-275, - strand, RNAz p=0.912741
               

               
               315-473, - strand, RNAz p=0.999334

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-511, gnl|bosTau2|chr29 (37185604-37186118)
               

               
               3-511, gnl|Hg17|chr11 (65856745-65856253)
               

               
               3-511, gnl|Mm7|chr19 (4949649-4950122)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-511, gnl|bosTau2|chr29 (37185604-37186118)
               

               
               3-511, gnl|Hg17|chr11 (65856745-65856253)
               

               
               3-511, gnl|Mm7|chr19 (4949649-4950122)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (1.07681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.07681)

	81-275, - strand, RNAz p=0.912741
	315-473, - strand, RNAz p=0.999334

	3-511, gnl\|bosTau2\|chr29 (37185604-37186118)
	3-511, gnl\|Hg17\|chr11 (65856745-65856253)
	3-511, gnl\|Mm7\|chr19 (4949649-4950122)