Non-Coding RNA Search

Ss1.1-rpigca0_007793.5

Sequence:


               
               CTCCACCATGGCCTGGACCCCTCTCCTGCTCCCCCTCCTCTCTCTCTGCACAGGCTCCGT
GGCTTCCTATGAGCTGACCCAGCCGTCTTCAGAGTCAGTGGCCTTGGGAAATACGGCCAA
GATCACCTGCTCCGGGGATCTGCTGGATGAAAAATATACGCAATGGTACCAGCAGAAGCC
AGGCCAGGCCCCCCTGCTGCTCATTTATAAGGACAGTGAGCGGCCCTCAGGGATCCCTGA
GCGGTTCTCTGGGTCCAGCTCAGGGAAAACGGCCACCCTGACCATCACTGGGGCCCAGGC
TGAGGACGAGGCCGACTACTACTGTCAGTCAACTGACGGCAGTAATGGTATTTTCGGCGG
TGGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCCCACGGTCAACCTCTTCCC
GCCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGTGTGTCTAATAAGTGACTT
CTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCACCACCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCACCATGGCCTGGACCCCTCTCCTGCTCCCCCTCCTCTCTCTCTGCACAGGCTCCGT
GGCTTCCTATGAGCTGACCCAGCCGTCTTCAGAGTCAGTGGCCTTGGGAAATACGGCCAA
GATCACCTGCTCCGGGGATCTGCTGGATGAAAAATATACGCAATGGTACCAGCAGAAGCC
AGGCCAGGCCCCCCTGCTGCTCATTTATAAGGACAGTGAGCGGCCCTCAGGGATCCCTGA
GCGGTTCTCTGGGTCCAGCTCAGGGAAAACGGCCACCCTGACCATCACTGGGGCCCAGGC
TGAGGACGAGGCCGACTACTACTGTCAGTCAACTGACGGCAGTAATGGTATTTTCGGCGG
TGGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCCCACGGTCAACCTCTTCCC
GCCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGTGTGTCTAATAAGTGACTT
CTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCACCACCGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|18606084|gb|AAH22823.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|18606084|gb|AAH22823.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               383-526, gnl|bosTau2|chr17 (41403615-41403758)
               

               
               383-526, gnl|Hg17|chr22 (21586260-21586403)
               

               
               383-526, gnl|Mm7|chr16_random (2587805-2587948)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               383-526, gnl|bosTau2|chr17 (41403615-41403758)
               

               
               383-526, gnl|Hg17|chr22 (21586260-21586403)
               

               
               383-526, gnl|Mm7|chr16_random (2587805-2587948)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               clu (1.19646)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               cly (0.241284)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.19646)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               cly (0.241284)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)

	383-526, gnl\|bosTau2\|chr17 (41403615-41403758)
	383-526, gnl\|Hg17\|chr22 (21586260-21586403)
	383-526, gnl\|Mm7\|chr16_random (2587805-2587948)

	clu (1.19646)
	csp (0.322373)
	cag (0.302389)
	cly (0.241284)
	lnt (0.142308)
	jej (0.0989218)