Non-Coding RNA Search

Ss1.1-rpigca0_008443.5

Sequence:


               
               TCTTTCATTAGGGGGAAGGAGTGAGGAAAGTACCAAACAGCAGCAGACTTTTAAACTTTA
AATAGACAGGTCTGAGTGCCTGAACTTGCTTTTTCATTTTACTTCATCCTCTGAGGCGTG
CCTACTTCACTTCTTTTAAGGGAAAGAGTAGTGTCCGGGCAACATGGGTGACTGGAGTGC
CTTAGGCAAACTCCTTGACAAGGTTCAAGCCTATTCCACCGCTGGAGGGAAGGTGTGGCT
GTCAGTCCTTTTCATTTTCCGAATCCTGCTCTTGGGCACAGCTGTTGAGTCAGCCTGGGG
TGATGAGCAGTCTGCCTTTCGTTGTAACACTCAGCAACCCGGTTGTGAAAATGTCTGCTA
TGACAAATCCTTCCCCATCTCTCACGTGCGTTTCTGGGTCCTGCAGATCATATTTGTGTC
TGTTCCTACACTCTTGTACCTGGCTCATGTGTTCTACGTGATGCGAAAGGAAGAGAAACT
GAACAAGAAAGAGGAGGAACTCAAAGTTGCCCAAACTGACGGTGTCAACGTGGAGATGCA
CTTAAAGCAGATAGAAATAAAGAAGTTTAAGTACGGCATTGAGGAGCACGGCAAGGTGAA
AATGCGAGGGGGCTTGCTGCGAACCTACATCATCAGTATCCTCTTCAAGTCTGTCTTCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTCATTAGGGGGAAGGAGTGAGGAAAGTACCAAACAGCAGCAGACTTTTAAACTTTA
AATAGACAGGTCTGAGTGCCTGAACTTGCTTTTTCATTTTACTTCATCCTCTGAGGCGTG
CCTACTTCACTTCTTTTAAGGGAAAGAGTAGTGTCCGGGCAACATGGGTGACTGGAGTGC
CTTAGGCAAACTCCTTGACAAGGTTCAAGCCTATTCCACCGCTGGAGGGAAGGTGTGGCT
GTCAGTCCTTTTCATTTTCCGAATCCTGCTCTTGGGCACAGCTGTTGAGTCAGCCTGGGG
TGATGAGCAGTCTGCCTTTCGTTGTAACACTCAGCAACCCGGTTGTGAAAATGTCTGCTA
TGACAAATCCTTCCCCATCTCTCACGTGCGTTTCTGGGTCCTGCAGATCATATTTGTGTC
TGTTCCTACACTCTTGTACCTGGCTCATGTGTTCTACGTGATGCGAAAGGAAGAGAAACT
GAACAAGAAAGAGGAGGAACTCAAAGTTGCCCAAACTGACGGTGTCAACGTGGAGATGCA
CTTAAAGCAGATAGAAATAAAGAAGTTTAAGTACGGCATTGAGGAGCACGGCAAGGTGAA
AATGCGAGGGGGCTTGCTGCGAACCTACATCATCAGTATCCTCTTCAAGTCTGTCTTCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24210474|dbj|BAC22078.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24210474|dbj|BAC22078.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               469-585, - strand, RNAz p=0.755585

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               469-585, - strand, RNAz p=0.755585

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-119, gnl|bosTau2|chr9 (15249542-15249660)
               

               
               1-119, gnl|canFam2|chrX (14576425-14576612)
               

               
               1-119, gnl|dasNov1|scaffold_7758 (48153-48343)
               

               
               1-119, gnl|echTel1|scaffold_230806 (5632-5816)
               

               
               1-119, gnl|galGal2|chr3 (60240377-60240193)
               

               
               1-119, gnl|hg17|chr6 (121798491-121798678)
               

               
               1-119, gnl|Hg17|chr6 (121798519-121798637)
               

               
               1-119, gnl|loxAfr1|scaffold_6995 (97910-97720)
               

               
               1-119, gnl|mm7|chr10 (56194559-56194750)
               

               
               1-119, gnl|Mm7|chr10 (56194587-56194705)
               

               
               1-119, gnl|monDom2|scaffold_0 (94078841-94078651)
               

               
               1-119, gnl|oryCun1|scaffold_185886 (5247-5437)
               

               
               1-119, gnl|panTro1|chr5 (124283446-124283633)
               

               
               1-119, gnl|rheMac2|chr4 (142551490-142551304)
               

               
               1-119, gnl|rn3|chr20 (35423605-35423798)
               


               
               150-660, gnl|bosTau2|chr9 (15259622-15260135)
               

               
               150-660, gnl|Hg17|chr6 (121809679-121810189)
               

               
               150-660, gnl|Mm7|chr10 (56204767-56205274)
               


               
               164-498, gnl|bosTau2|chr12 (20723545-20723211)
               

               
               164-498, gnl|Hg17|chr13 (19615427-19615093)
               

               
               164-498, gnl|Mm7|chr14 (51904632-51904298)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-119, gnl|bosTau2|chr9 (15249542-15249660)
               

               
               1-119, gnl|canFam2|chrX (14576425-14576612)
               

               
               1-119, gnl|dasNov1|scaffold_7758 (48153-48343)
               

               
               1-119, gnl|echTel1|scaffold_230806 (5632-5816)
               

               
               1-119, gnl|galGal2|chr3 (60240377-60240193)
               

               
               1-119, gnl|hg17|chr6 (121798491-121798678)
               

               
               1-119, gnl|Hg17|chr6 (121798519-121798637)
               

               
               1-119, gnl|loxAfr1|scaffold_6995 (97910-97720)
               

               
               1-119, gnl|mm7|chr10 (56194559-56194750)
               

               
               1-119, gnl|Mm7|chr10 (56194587-56194705)
               

               
               1-119, gnl|monDom2|scaffold_0 (94078841-94078651)
               

               
               1-119, gnl|oryCun1|scaffold_185886 (5247-5437)
               

               
               1-119, gnl|panTro1|chr5 (124283446-124283633)
               

               
               1-119, gnl|rheMac2|chr4 (142551490-142551304)
               

               
               1-119, gnl|rn3|chr20 (35423605-35423798)
               


               
               150-660, gnl|bosTau2|chr9 (15259622-15260135)
               

               
               150-660, gnl|Hg17|chr6 (121809679-121810189)
               

               
               150-660, gnl|Mm7|chr10 (56204767-56205274)
               


               
               164-498, gnl|bosTau2|chr12 (20723545-20723211)
               

               
               164-498, gnl|Hg17|chr13 (19615427-19615093)
               

               
               164-498, gnl|Mm7|chr14 (51904632-51904298)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               clu (0.717875)
               

               
               nje (0.16592)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.717875)
               

               
               nje (0.16592)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	1-119, gnl\|bosTau2\|chr9 (15249542-15249660)
	1-119, gnl\|canFam2\|chrX (14576425-14576612)
	1-119, gnl\|dasNov1\|scaffold_7758 (48153-48343)
	1-119, gnl\|echTel1\|scaffold_230806 (5632-5816)
	1-119, gnl\|galGal2\|chr3 (60240377-60240193)
	1-119, gnl\|hg17\|chr6 (121798491-121798678)
	1-119, gnl\|Hg17\|chr6 (121798519-121798637)
	1-119, gnl\|loxAfr1\|scaffold_6995 (97910-97720)
	1-119, gnl\|mm7\|chr10 (56194559-56194750)
	1-119, gnl\|Mm7\|chr10 (56194587-56194705)
	1-119, gnl\|monDom2\|scaffold_0 (94078841-94078651)
	1-119, gnl\|oryCun1\|scaffold_185886 (5247-5437)
	1-119, gnl\|panTro1\|chr5 (124283446-124283633)
	1-119, gnl\|rheMac2\|chr4 (142551490-142551304)
	1-119, gnl\|rn3\|chr20 (35423605-35423798)

	150-660, gnl\|bosTau2\|chr9 (15259622-15260135)
	150-660, gnl\|Hg17\|chr6 (121809679-121810189)
	150-660, gnl\|Mm7\|chr10 (56204767-56205274)

	164-498, gnl\|bosTau2\|chr12 (20723545-20723211)
	164-498, gnl\|Hg17\|chr13 (19615427-19615093)
	164-498, gnl\|Mm7\|chr14 (51904632-51904298)

	clu (0.717875)
	nje (0.16592)
	che (0.136314)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)