Non-Coding RNA Search

Ss1.1-rpigca0_008468.5

Sequence:


               
               AGAATCCAAAGGCCCTGCTGCTCCTCTAAATGTAGCTGACCAAAAGCTTCTTGAAGCTAG
TACACAGTTTCAGAAAAAACAGGGAAAGAATACAATTGATGTCTGGTGGCTTTTTGATGA
TGGAGGTTTGACCTTATTGATACCATATCTTCTGACTACCAAGAAAAAGTGGAAGGATTG
TAAGATCAGAGTATTCATTGGTGGAAAAATAAACAGAATAGACCATGATCGGAGAGCGAT
GGCTACTTTGCTTAGCAAGTTCCGGATAGACTTCTCTGATATCATGGTCTTAGGAGATAT
TAATACTAAACCAAAGAAAGAAAATATTGTAGCTTTTGATGAAATGATTGAGCCGTATAG
ACTTCATGAAGATGATAAAGAACAAGATATTGCAGATAAAATGAAAGAAGATGAACCATG
GCGAATAACAGATAATGAGCTTGAACTTTATAAGACCAAGACATACCGGCAGATCAGGTT
AAATGAATTATTAAAGGAACATTCAAACACAGCTAATATCATTGTCATGAGTCTCCCAGT
TGCAAGAAAAGGTGCTGTGTCTAGTGCTCTCTACATGGCATGGTTAGAAGCTCTGTCCAA
GGACCTACCACCAATTCTCCTAGTCCGTGGAAATCATCAGAGCGTCCTTACTTTCTATTC
TTAAATGTTCTATCTGCACAGTGGACAGTCCTCCAGATGGTACTTCAGTGCCTAGTGAAG
TAACTGATAACACTGAAATCTTCAATGACACATTAACATCACAATGGCGAACTGGGACTT
TTTTCACTATTTCATTAATTTGAAAGCACACAGGGAAGTTGCTCCATTGATATGTGTATG
GAGACTTCAGTTTTAGTCAATTCTATATCTCAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATCCAAAGGCCCTGCTGCTCCTCTAAATGTAGCTGACCAAAAGCTTCTTGAAGCTAG
TACACAGTTTCAGAAAAAACAGGGAAAGAATACAATTGATGTCTGGTGGCTTTTTGATGA
TGGAGGTTTGACCTTATTGATACCATATCTTCTGACTACCAAGAAAAAGTGGAAGGATTG
TAAGATCAGAGTATTCATTGGTGGAAAAATAAACAGAATAGACCATGATCGGAGAGCGAT
GGCTACTTTGCTTAGCAAGTTCCGGATAGACTTCTCTGATATCATGGTCTTAGGAGATAT
TAATACTAAACCAAAGAAAGAAAATATTGTAGCTTTTGATGAAATGATTGAGCCGTATAG
ACTTCATGAAGATGATAAAGAACAAGATATTGCAGATAAAATGAAAGAAGATGAACCATG
GCGAATAACAGATAATGAGCTTGAACTTTATAAGACCAAGACATACCGGCAGATCAGGTT
AAATGAATTATTAAAGGAACATTCAAACACAGCTAATATCATTGTCATGAGTCTCCCAGT
TGCAAGAAAAGGTGCTGTGTCTAGTGCTCTCTACATGGCATGGTTAGAAGCTCTGTCCAA
GGACCTACCACCAATTCTCCTAGTCCGTGGAAATCATCAGAGCGTCCTTACTTTCTATTC
TTAAATGTTCTATCTGCACAGTGGACAGTCCTCCAGATGGTACTTCAGTGCCTAGTGAAG
TAACTGATAACACTGAAATCTTCAATGACACATTAACATCACAATGGCGAACTGGGACTT
TTTTCACTATTTCATTAATTTGAAAGCACACAGGGAAGTTGCTCCATTGATATGTGTATG
GAGACTTCAGTTTTAGTCAATTCTATATCTCAGTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61837345|ref|XP_598714.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837345|ref|XP_598714.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-127, gnl|bosTau2|chr6 (41997543-41997417)
               

               
               1-127, gnl|Hg17|chr5 (127542156-127542282)
               

               
               1-127, gnl|Mm7|chr18 (58315579-58315705)
               


               
               322-460, gnl|bosTau2|chr6 (41994242-41994104)
               

               
               322-460, gnl|Hg17|chr5 (127547954-127548092)
               

               
               322-460, gnl|Mm7|chr18 (58320279-58320417)
               


               
               526-876, gnl|bosTau2|chr6 (41991172-41990835)
               

               
               526-876, gnl|Hg17|chr5 (127550084-127550425)
               

               
               526-876, gnl|Mm7|chr18 (58323186-58323521)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-127, gnl|bosTau2|chr6 (41997543-41997417)
               

               
               1-127, gnl|Hg17|chr5 (127542156-127542282)
               

               
               1-127, gnl|Mm7|chr18 (58315579-58315705)
               


               
               322-460, gnl|bosTau2|chr6 (41994242-41994104)
               

               
               322-460, gnl|Hg17|chr5 (127547954-127548092)
               

               
               322-460, gnl|Mm7|chr18 (58320279-58320417)
               


               
               526-876, gnl|bosTau2|chr6 (41991172-41990835)
               

               
               526-876, gnl|Hg17|chr5 (127550084-127550425)
               

               
               526-876, gnl|Mm7|chr18 (58323186-58323521)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               clu (0.478583)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ski (0.146735)
               

               
               sug (0.127291)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               ski (0.146735)
               

               
               sug (0.127291)

	1-127, gnl\|bosTau2\|chr6 (41997543-41997417)
	1-127, gnl\|Hg17\|chr5 (127542156-127542282)
	1-127, gnl\|Mm7\|chr18 (58315579-58315705)

	322-460, gnl\|bosTau2\|chr6 (41994242-41994104)
	322-460, gnl\|Hg17\|chr5 (127547954-127548092)
	322-460, gnl\|Mm7\|chr18 (58320279-58320417)

	526-876, gnl\|bosTau2\|chr6 (41991172-41990835)
	526-876, gnl\|Hg17\|chr5 (127550084-127550425)
	526-876, gnl\|Mm7\|chr18 (58323186-58323521)

	clu (0.478583)
	sme (0.305437)
	cbe (0.239234)
	pgl (0.236967)
	ski (0.146735)
	sug (0.127291)