Non-Coding RNA Search

Ss1.1-rpigca0_008594.5

Sequence:


               
               GAGGGGGCTGTGGTAAAAGCCGTCCGGAAAATGGCCGCCGCCGCCGCTGCCGCGCCGAGC
GGAGGAGGAGGAGGAGGCGAGGAGGAGAGACTGCTCCATAAAAATACAGACTCACCAGTT
CCTGCTTTGATGTGACATGTGACTCCCCAGAATACATCTTGCTTCTGTAGACCAGCTCCA
ACAAGATTCCATGGTAGCTGGAATGTTAGGGCTCAGGGAAGAAAAGTCAGAAGAACAAGA
TCTCCAGGGCCTGAAGGACAAACCTTTGAAGTTTAAAAAGGTGAAGAAGGATAAGAAAGA
CGACCGAGAGGGCAAGCATGAGCCCCTGCAGCCGCCGGCCCACCACTCTGCAGAGCCAGC
AGAGGCAGGCAAAGCAGAGACCTCGGAAGGGTCAGGCTCAGCGCCCGCTGTCCCAGAAGC
TTCTGCCTCCCCTAAGCAGCGGCGCTCCATCATTCGCGACCGGGGGCCCATGTACGACGA
CCCCACGCTGCCTGAAGGTTGGACCCGAAAGCTTAAGCAAAGGAAATCCGGCCGCTCCGC
TGGGAAGTATGATGTGTATTTGATCAATCCCCAGGGAAAAGCCTTTCGCTCTAAAGTGGA
GTTGATTGCGTACTTCGAAAAGGTAGGCGACACCTCCCTGGACCCTAATGATTTTGACTT
CACGGTAACTGGGAGAGGGAGCCCCTCCCGGCGAGAGCAGAAACCACCTAAGAAGCCCAA
ATCTCCCAAAGCTCCAGGAACTGGCAGAGGTCGGGGACGCCCCAAAGGGAGTGGCACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGGGCTGTGGTAAAAGCCGTCCGGAAAATGGCCGCCGCCGCCGCTGCCGCGCCGAGC
GGAGGAGGAGGAGGAGGCGAGGAGGAGAGACTGCTCCATAAAAATACAGACTCACCAGTT
CCTGCTTTGATGTGACATGTGACTCCCCAGAATACATCTTGCTTCTGTAGACCAGCTCCA
ACAAGATTCCATGGTAGCTGGAATGTTAGGGCTCAGGGAAGAAAAGTCAGAAGAACAAGA
TCTCCAGGGCCTGAAGGACAAACCTTTGAAGTTTAAAAAGGTGAAGAAGGATAAGAAAGA
CGACCGAGAGGGCAAGCATGAGCCCCTGCAGCCGCCGGCCCACCACTCTGCAGAGCCAGC
AGAGGCAGGCAAAGCAGAGACCTCGGAAGGGTCAGGCTCAGCGCCCGCTGTCCCAGAAGC
TTCTGCCTCCCCTAAGCAGCGGCGCTCCATCATTCGCGACCGGGGGCCCATGTACGACGA
CCCCACGCTGCCTGAAGGTTGGACCCGAAAGCTTAAGCAAAGGAAATCCGGCCGCTCCGC
TGGGAAGTATGATGTGTATTTGATCAATCCCCAGGGAAAAGCCTTTCGCTCTAAAGTGGA
GTTGATTGCGTACTTCGAAAAGGTAGGCGACACCTCCCTGGACCCTAATGATTTTGACTT
CACGGTAACTGGGAGAGGGAGCCCCTCCCGGCGAGAGCAGAAACCACCTAAGAAGCCCAA
ATCTCCCAAAGCTCCAGGAACTGGCAGAGGTCGGGGACGCCCCAAAGGGAGTGGCACCAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|6435791|pdb|1QK9|A

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|6435791|pdb|1QK9|A

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               331-450, - strand, RNAz p=0.94026

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               331-450, - strand, RNAz p=0.94026

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               212-567, gnl|bosTau2|chr7 (6413938-6413583)
               

               
               212-567, gnl|Hg17|chrX (152818861-152818505)
               

               
               212-567, gnl|Mm7|chrX (69423987-69423631)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               212-567, gnl|bosTau2|chr7 (6413938-6413583)
               

               
               212-567, gnl|Hg17|chrX (152818861-152818505)
               

               
               212-567, gnl|Mm7|chrX (69423987-69423631)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               clu (0.239292)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)

	212-567, gnl\|bosTau2\|chr7 (6413938-6413583)
	212-567, gnl\|Hg17\|chrX (152818861-152818505)
	212-567, gnl\|Mm7\|chrX (69423987-69423631)