Non-Coding RNA Search

Ss1.1-rpigca0_009008.5

Sequence:


               
               TGCTAGGGAGGGACCTCAACCCCTCTACCAGTAAGTGGGGTTACTGTGGTTTATGTCAAG
GCCCATAAGAGAGACTGGAGGACCAAGCCTAGTCCCTCCCACCAGCGTCTGGCAGTTCTC
TGGGCAGCAGCAGGGAGCAGGGCAAGCAGTGGGTAAGCAGTGGCCTGGGGGGCCGAGGGT
GGGGAGGGGTGGCCCTAGGCAACCTAGGTCATCACCAGGCCCTCAGAGCCTGTGGAGCTA
GTGGACTCAGAGCCCACCTTGAGCCGAAGCCCCATGGGATTGTAGAGATCAAAGTCTTCA
GCTATTGCCAGTTGCACACGACCATTGAGTCCCCTTCTGCCAGGCTCCAGAAAGACCACA
TGCTTGTGGACACTGGCCTTGTGACTGGGTGCATCAGGTGGCGTGGTGCTGAGCACTGAG
GACTGCGCACTCAGGTCCTGGAGTGGGCTGGGTGTTCGGGGCCAGCGTCGGCAGCGGCAG
GTGCGATGGTAGCAGCGGCGACAGCCGGGACAGGGTGGTGCGAACAGGTAGAGCAGCACA
AGCCCTAGGCCCACGGCACAGCCCAGCAGTGTAGTAAAGCCTGTGTTGAAAGCCTCAGGC
TCAGGGTGCGGGAAGTGTACACTCACGTTGTACTCGTGCGTCTGGTTGTGGTGCAGATGG
GGCCCAGTGGCCAGGCACACAAAGACACCCTCATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTAGGGAGGGACCTCAACCCCTCTACCAGTAAGTGGGGTTACTGTGGTTTATGTCAAG
GCCCATAAGAGAGACTGGAGGACCAAGCCTAGTCCCTCCCACCAGCGTCTGGCAGTTCTC
TGGGCAGCAGCAGGGAGCAGGGCAAGCAGTGGGTAAGCAGTGGCCTGGGGGGCCGAGGGT
GGGGAGGGGTGGCCCTAGGCAACCTAGGTCATCACCAGGCCCTCAGAGCCTGTGGAGCTA
GTGGACTCAGAGCCCACCTTGAGCCGAAGCCCCATGGGATTGTAGAGATCAAAGTCTTCA
GCTATTGCCAGTTGCACACGACCATTGAGTCCCCTTCTGCCAGGCTCCAGAAAGACCACA
TGCTTGTGGACACTGGCCTTGTGACTGGGTGCATCAGGTGGCGTGGTGCTGAGCACTGAG
GACTGCGCACTCAGGTCCTGGAGTGGGCTGGGTGTTCGGGGCCAGCGTCGGCAGCGGCAG
GTGCGATGGTAGCAGCGGCGACAGCCGGGACAGGGTGGTGCGAACAGGTAGAGCAGCACA
AGCCCTAGGCCCACGGCACAGCCCAGCAGTGTAGTAAAGCCTGTGTTGAAAGCCTCAGGC
TCAGGGTGCGGGAAGTGTACACTCACGTTGTACTCGTGCGTCTGGTTGTGGTGCAGATGG
GGCCCAGTGGCCAGGCACACAAAGACACCCTCATGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               297-456, + strand, RNAz p=0.982201

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-456, + strand, RNAz p=0.982201

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               324-427, + strand, RNAmicro p=0.96187

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               324-427, + strand, RNAmicro p=0.96187

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               71-696, gnl|bosTau2|chr22 (38090767-38091387)
               

               
               71-696, gnl|Hg17|chr3 (49730270-49730868)
               

               
               71-696, gnl|Mm7|chr9 (107786674-107786072)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-696, gnl|bosTau2|chr22 (38090767-38091387)
               

               
               71-696, gnl|Hg17|chr3 (49730270-49730868)
               

               
               71-696, gnl|Mm7|chr9 (107786674-107786072)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)
               

               
               cty (0.10408)

	71-696, gnl\|bosTau2\|chr22 (38090767-38091387)
	71-696, gnl\|Hg17\|chr3 (49730270-49730868)
	71-696, gnl\|Mm7\|chr9 (107786674-107786072)