Non-Coding RNA Search

Ss1.1-rpigca0_009023.5

Sequence:


               
               AGCCTTCCTCAGACCTGCTTATGTGCATGACGCCTTTTTGGGTGCTGGGGATCGAGCCTT
CCTGCTCTGCCCTGTCCTGTCCTGTCCCACGGGGTTCTCGTGTTGGGGCTCATCCTGGGA
ACCTGCTTCCAGAAGCCCTGCTTGGCGAGGCCCAGGGAGACACCCACAGTTCTTGTGCTC
CTTCTGCAAGGGTTTGGAGGTCTGACTTTTGCAGGGCTTCTGCCCAGGGGAGCTGGGCCG
AGCTTGGGGTGGGGTGGGGGCTGCCACCTGTACCCCACGTGGCCTGCCTACCATACCAAA
GCCTTGCTCCCTCCCCCTTCTGTCTCAGTTTCCTTCCCAGGCCCAGCTGGTGTTGAGCAG
AAGGCATATATTTAGGCCAAAGGGCCAAGAGTCCAGCTGGGCAATTGGGAAGCCCCAGAG
CCTCACCCGAGGTCTCTAAGCTGGATGGAAAAAGCCACCAGGACTCCATCCTTCAGTAGC
TTCTTAAGCCTCTGGGTTCCCTAGAGAGAGGCATTGTACTGATATATAAATATATATAAT
ATATATATGTGAGACATACTGACAGAATCTGTAAGCTAATAAAATATAAGAAAAGGTTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTTCCTCAGACCTGCTTATGTGCATGACGCCTTTTTGGGTGCTGGGGATCGAGCCTT
CCTGCTCTGCCCTGTCCTGTCCTGTCCCACGGGGTTCTCGTGTTGGGGCTCATCCTGGGA
ACCTGCTTCCAGAAGCCCTGCTTGGCGAGGCCCAGGGAGACACCCACAGTTCTTGTGCTC
CTTCTGCAAGGGTTTGGAGGTCTGACTTTTGCAGGGCTTCTGCCCAGGGGAGCTGGGCCG
AGCTTGGGGTGGGGTGGGGGCTGCCACCTGTACCCCACGTGGCCTGCCTACCATACCAAA
GCCTTGCTCCCTCCCCCTTCTGTCTCAGTTTCCTTCCCAGGCCCAGCTGGTGTTGAGCAG
AAGGCATATATTTAGGCCAAAGGGCCAAGAGTCCAGCTGGGCAATTGGGAAGCCCCAGAG
CCTCACCCGAGGTCTCTAAGCTGGATGGAAAAAGCCACCAGGACTCCATCCTTCAGTAGC
TTCTTAAGCCTCTGGGTTCCCTAGAGAGAGGCATTGTACTGATATATAAATATATATAAT
ATATATATGTGAGACATACTGACAGAATCTGTAAGCTAATAAAATATAAGAAAAGGTTAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               308-457, - strand, RNAz p=0.999385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-457, - strand, RNAz p=0.999385

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               255-376, - strand, RNAmicro p=0.953511

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               255-376, - strand, RNAmicro p=0.953511

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-612, gnl|bosTau2|chr2 (63351732-63351130)
               

               
               1-612, gnl|Hg17|chr2 (218493593-218493008)
               

               
               1-612, gnl|Mm7|chr1 (74155732-74155159)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-612, gnl|bosTau2|chr2 (63351732-63351130)
               

               
               1-612, gnl|Hg17|chr2 (218493593-218493008)
               

               
               1-612, gnl|Mm7|chr1 (74155732-74155159)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fat (0.294855)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	1-612, gnl\|bosTau2\|chr2 (63351732-63351130)
	1-612, gnl\|Hg17\|chr2 (218493593-218493008)
	1-612, gnl\|Mm7\|chr1 (74155732-74155159)