Ss1.1-rpigca0_009159.5.5
|
GGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACAC
AAGGAAAGAATAGGGCACAGGTGGGGATGGATGGTTGGTTGGATTTGTCACTTTTCTTAT
GGTAAACAATTAAATCCATATTCTCTCTGCTTAGAATCTAGGAAGAAAATCTGATTCCTA
GTCCCAATTGTTTTGCCGTAATTTTCAAATGTTTCCCATGTCAAAGTCCCATAATGTTTT
CAGATTAAATTTTAGATTTTGCAATTGTCCCTAACTAATTTGGTCTACTTTATAATTCTT
CTGTAATATTCCTAATTAACCCCCAGTCAATGGAGTTGAGAGACTATGGCTTTAAAAATG
TTAATGCAAACCTGGCTTTAGCTGTAATAACATCCACCTAGTAAATTAATATTACCATAA
GAAAATGTGATACTTTCTGATCTTCGAAGTTGTTCGTGTAGTCTTTTTCGACGCCCGAAC
GCACTAAGAGACGATGATGTTGGGCACCGAAGGCGGAGAGGGATTCGTGGTGAAGGTCCG
GGGCTTGCCCTGGTCCTGCTCGGCGGACGAAGTGCAGCGGTTTTTTTCTGACTGCAAAAT
TCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGAGTGGCGA
GGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGA
AACTATGGGACACAGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGT
GTTGAAGCATACTGGTCCAAATAGTCCTGACACGGCCAATGATGGCTTTGTACGGCTTAG
AGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGTTGGAAAT
CGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTT
CGTGCAGTTTGCTTCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAAT
AGGGCACAGGTATATCGAAATCTTTAAGAGCAGTCGTGCTGAAGTTAGAACTCACTATGA
TCCTCCACGAAAACTTATGGCCATGCAGCGACCAGGTCCCTATGACAGACCTGGGGCTGG
CAGAGGGTATAACAGCATTGGCAGGGGAGCTGGCTTTGAAAGGATGAGGCGTGGTGCTTA
TGGTGGAGGCTATGGAGGCTATGATGATTATAATGGCTATAATGATGGCTATGGATTTGG
ATCAGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCAGATCACAGATA
CGGGGATGGTGGCTCTACTTTCCAGAGCACAACAGGACACTGTGTACACATGCGGGGATT
ACCTTACAGAGCTACTGAGAATGACATTTATAATTTTTTTTCACCACTCAACCCTGTGAG
AGTACATATTGAAATTGGTCCTGATGGCAGAGTAACTGGTGAAGCAGATGTGGAGTTTGC
AACTCATGAAGATGCAGTGGCAGCTATGTCAAAAGACAAAGCAAATATGCAACACAGATA
TGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAACACAGATA
TGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAAT
GATGGGAGGCATGGGCTTGTCAAACCAGTCCAGTTATGGTGGCCCAGCTAGCCAGCAGCT
GAGTGGTGGTTATGGAGGCGGTTATGGTGGCCAGAGCAGCATGAGTGGATATGACCAAGT
TTTACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAGGCAGCCAAGGAGCAGTG
AACAGCAGCTACTACAGTAGTGGAAGCCGAGCATCTATGGGAGTGAACGGAATGGGAGGG
ATGTCTAGCATGTCCAGTATGAGTGGTGGATGGGGAATGTAATTGGTCCTGATCACTGAC
TCTTAGTCGACATTTTTAAAAAGAAAAACAACTTAAGTTTTAACAGTTTTGCAATACAAG
CTTGTGATTTATGCTTACTCTAAGTGGGAATCAGGATTGTTTTAAAGACTTAAGGTTCAG
TATTTTTGAACACAAACATTCATCTAGGATGTAACAACTAAGTTGAGTAAACTATAACTG
TTAAATAATTTTCAGCTTTTCTCAAGTTAGTTATATTGTAGGATGTACTTAAGCAGTAAG
TGTATTTAGGTTAAAGCAGTTGAATTATGTTAAATGTTGCTCTTATACCACATTACATTG
AACACTGAGTGCATGTTGAAAGACATGCTTTTTTGTAAAAATATAGGAGCTGTGTCTACA
ATTAAAAGTGAAACATTTGGCATGTTTGTTAATTCTAGTTTTCATTTAATAACCTCTAAG
GCACGTAAGTTTAAGCTTTTTTTTTAAGTTAATGGGGAAAATTTGAGACGCAATACCAAT
ACTTTAGGATTCTGGTCTTGGTGTTTGTATGAAATTCTGAGGCCTTGATTTAAATCTTTC
ATTGTATTGTGATTTCCTTTTAGGTGTATTGCGCTAAAGTGAACTTGTCAAATAAATCTT
CTTTTAAAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACAC
AAGGAAAGAATAGGGCACAGGTGGGGATGGATGGTTGGTTGGATTTGTCACTTTTCTTAT
GGTAAACAATTAAATCCATATTCTCTCTGCTTAGAATCTAGGAAGAAAATCTGATTCCTA
GTCCCAATTGTTTTGCCGTAATTTTCAAATGTTTCCCATGTCAAAGTCCCATAATGTTTT
CAGATTAAATTTTAGATTTTGCAATTGTCCCTAACTAATTTGGTCTACTTTATAATTCTT
CTGTAATATTCCTAATTAACCCCCAGTCAATGGAGTTGAGAGACTATGGCTTTAAAAATG
TTAATGCAAACCTGGCTTTAGCTGTAATAACATCCACCTAGTAAATTAATATTACCATAA
GAAAATGTGATACTTTCTGATCTTCGAAGTTGTTCGTGTAGTCTTTTTCGACGCCCGAAC
GCACTAAGAGACGATGATGTTGGGCACCGAAGGCGGAGAGGGATTCGTGGTGAAGGTCCG
GGGCTTGCCCTGGTCCTGCTCGGCGGACGAAGTGCAGCGGTTTTTTTCTGACTGCAAAAT
TCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGAGTGGCGA
GGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGA
AACTATGGGACACAGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGT
GTTGAAGCATACTGGTCCAAATAGTCCTGACACGGCCAATGATGGCTTTGTACGGCTTAG
AGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGTTGGAAAT
CGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTT
CGTGCAGTTTGCTTCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAAT
AGGGCACAGGTATATCGAAATCTTTAAGAGCAGTCGTGCTGAAGTTAGAACTCACTATGA
TCCTCCACGAAAACTTATGGCCATGCAGCGACCAGGTCCCTATGACAGACCTGGGGCTGG
CAGAGGGTATAACAGCATTGGCAGGGGAGCTGGCTTTGAAAGGATGAGGCGTGGTGCTTA
TGGTGGAGGCTATGGAGGCTATGATGATTATAATGGCTATAATGATGGCTATGGATTTGG
ATCAGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCAGATCACAGATA
CGGGGATGGTGGCTCTACTTTCCAGAGCACAACAGGACACTGTGTACACATGCGGGGATT
ACCTTACAGAGCTACTGAGAATGACATTTATAATTTTTTTTCACCACTCAACCCTGTGAG
AGTACATATTGAAATTGGTCCTGATGGCAGAGTAACTGGTGAAGCAGATGTGGAGTTTGC
AACTCATGAAGATGCAGTGGCAGCTATGTCAAAAGACAAAGCAAATATGCAACACAGATA
TGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAACACAGATA
TGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAAT
GATGGGAGGCATGGGCTTGTCAAACCAGTCCAGTTATGGTGGCCCAGCTAGCCAGCAGCT
GAGTGGTGGTTATGGAGGCGGTTATGGTGGCCAGAGCAGCATGAGTGGATATGACCAAGT
TTTACAGGAAAACTCCAGTGATTTTCAATCAAACATTGCATAGGCAGCCAAGGAGCAGTG
AACAGCAGCTACTACAGTAGTGGAAGCCGAGCATCTATGGGAGTGAACGGAATGGGAGGG
ATGTCTAGCATGTCCAGTATGAGTGGTGGATGGGGAATGTAATTGGTCCTGATCACTGAC
TCTTAGTCGACATTTTTAAAAAGAAAAACAACTTAAGTTTTAACAGTTTTGCAATACAAG
CTTGTGATTTATGCTTACTCTAAGTGGGAATCAGGATTGTTTTAAAGACTTAAGGTTCAG
TATTTTTGAACACAAACATTCATCTAGGATGTAACAACTAAGTTGAGTAAACTATAACTG
TTAAATAATTTTCAGCTTTTCTCAAGTTAGTTATATTGTAGGATGTACTTAAGCAGTAAG
TGTATTTAGGTTAAAGCAGTTGAATTATGTTAAATGTTGCTCTTATACCACATTACATTG
AACACTGAGTGCATGTTGAAAGACATGCTTTTTTGTAAAAATATAGGAGCTGTGTCTACA
ATTAAAAGTGAAACATTTGGCATGTTTGTTAATTCTAGTTTTCATTTAATAACCTCTAAG
GCACGTAAGTTTAAGCTTTTTTTTTAAGTTAATGGGGAAAATTTGAGACGCAATACCAAT
ACTTTAGGATTCTGGTCTTGGTGTTTGTATGAAATTCTGAGGCCTTGATTTAAATCTTTC
ATTGTATTGTGATTTCCTTTTAGGTGTATTGCGCTAAAGTGAACTTGTCAAATAAATCTT
CTTTTAAAAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1-444, gnl|bosTau2|chr7 (286421-285976) |
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1-444, gnl|Hg17|chr5 (178978955-178978523) |
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1-444, gnl|Mm7|chr11 (50338275-50338715) |
| |
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487-1608, gnl|bosTau2|chr28 (8524064-8525185) |
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487-1608, gnl|Hg17|chr10 (43203345-43202224) |
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487-1608, gnl|Mm7|chr6 (117949211-117950332) |
| |
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1363-1583, gnl|bosTau2|chr12 (22299292-22299512) |
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1363-1583, gnl|Hg17|chr10 (69769267-69771380) |
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1363-1583, gnl|Mm7|chr10 (62536060-62534930) |
| |
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1611-1887, gnl|bosTau2|chr28 (8525128-8525398) |
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1611-1887, gnl|Hg17|chr10 (43202281-43202009) |
|
1611-1887, gnl|Mm7|chr6 (117950275-117950554) |
| |
|
2370-2606, gnl|bosTau2|chr29 (43751062-43751294) |
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2370-2606, gnl|Mm7|chrX (121944698-121944945) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-444, gnl|bosTau2|chr7 (286421-285976) |
|
1-444, gnl|Hg17|chr5 (178978955-178978523) |
|
1-444, gnl|Mm7|chr11 (50338275-50338715) |
| |
|
487-1608, gnl|bosTau2|chr28 (8524064-8525185) |
|
487-1608, gnl|Hg17|chr10 (43203345-43202224) |
|
487-1608, gnl|Mm7|chr6 (117949211-117950332) |
| |
|
1363-1583, gnl|bosTau2|chr12 (22299292-22299512) |
|
1363-1583, gnl|Hg17|chr10 (69769267-69771380) |
|
1363-1583, gnl|Mm7|chr10 (62536060-62534930) |
| |
|
1611-1887, gnl|bosTau2|chr28 (8525128-8525398) |
|
1611-1887, gnl|Hg17|chr10 (43202281-43202009) |
|
1611-1887, gnl|Mm7|chr6 (117950275-117950554) |
| |
|
2370-2606, gnl|bosTau2|chr29 (43751062-43751294) |
|
2370-2606, gnl|Mm7|chrX (121944698-121944945) |
|
clu (31.3472) |
|
liv (4.97367) |
|
kid (2.72444) |
|
tra (2.33875) |
|
spl (2.00458) |
|
thg (1.90186) |
|
lin (1.74723) |
|
ret (1.5448) |
|
csk (1.40746) |
|
sin (1.39958) |
|
ova (1.29132) |
|
amn (1.25313) |
|
sme (1.22175) |
|
eye (1.19352) |
|
fty (1.05504) |
|
tes (1.03907) |
|
pro (1.02407) |
|
cut (1.01954) |
|
sug (1.01833) |
|
cbe (0.956938) |
|
tbr (0.925069) |
|
bfe (0.899146) |
|
cte (0.87822) |
|
ste (0.811249) |
|
aor (0.781097) |
|
elu (0.770713) |
|
lun (0.752445) |
|
cmu (0.745573) |
|
fat (0.737137) |
|
gul (0.710353) |
|
ton (0.702001) |
|
mgp (0.692042) |
|
nmm (0.664011) |
|
nco (0.646935) |
|
fco (0.628832) |
|
bla (0.621736) |
|
eep (0.61282) |
|
ecc (0.575175) |
|
nlu (0.575043) |
|
cbl (0.573987) |
|
fce (0.543183) |
|
mcp (0.511945) |
|
cki (0.495704) |
|
pgl (0.473934) |
|
ece (0.45861) |
|
ski (0.440205) |
|
lyg (0.399308) |
|
eje (0.395335) |
|
col (0.390016) |
|
mgm (0.360685) |
|
ebs (0.354904) |
|
ill (0.351185) |
|
jca (0.34188) |
|
vin (0.332557) |
|
isp (0.300752) |
|
nbm (0.297974) |
|
ldo (0.291008) |
|
lnt (0.284616) |
|
nca (0.273748) |
|
ssp (0.271039) |
|
ese (0.253004) |
|
eru (0.240096) |
|
med (0.232504) |
|
nms (0.213858) |
|
fli (0.202881) |
|
nep (0.183925) |
|
sag (0.182715) |
|
sto (0.179824) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
csp (0.161186) |
|
eli (0.151814) |
|
pty (0.142714) |
|
che (0.136314) |
|
spc (0.113366) |
|
cty (0.10408) |
|
clu (31.3472) |
|
liv (4.97367) |
|
kid (2.72444) |
|
tra (2.33875) |
|
spl (2.00458) |
|
thg (1.90186) |
|
lin (1.74723) |
|
ret (1.5448) |
|
csk (1.40746) |
|
sin (1.39958) |
|
ova (1.29132) |
|
amn (1.25313) |
|
sme (1.22175) |
|
eye (1.19352) |
|
fty (1.05504) |
|
tes (1.03907) |
|
pro (1.02407) |
|
cut (1.01954) |
|
sug (1.01833) |
|
cbe (0.956938) |
|
tbr (0.925069) |
|
bfe (0.899146) |
|
cte (0.87822) |
|
ste (0.811249) |
|
aor (0.781097) |
|
elu (0.770713) |
|
lun (0.752445) |
|
cmu (0.745573) |
|
fat (0.737137) |
|
gul (0.710353) |
|
ton (0.702001) |
|
mgp (0.692042) |
|
nmm (0.664011) |
|
nco (0.646935) |
|
fco (0.628832) |
|
bla (0.621736) |
|
eep (0.61282) |
|
ecc (0.575175) |
|
nlu (0.575043) |
|
cbl (0.573987) |
|
fce (0.543183) |
|
mcp (0.511945) |
|
cki (0.495704) |
|
pgl (0.473934) |
|
ece (0.45861) |
|
ski (0.440205) |
|
lyg (0.399308) |
|
eje (0.395335) |
|
col (0.390016) |
|
mgm (0.360685) |
|
ebs (0.354904) |
|
ill (0.351185) |
|
jca (0.34188) |
|
vin (0.332557) |
|
isp (0.300752) |
|
nbm (0.297974) |
|
ldo (0.291008) |
|
lnt (0.284616) |
|
nca (0.273748) |
|
ssp (0.271039) |
|
ese (0.253004) |
|
eru (0.240096) |
|
med (0.232504) |
|
nms (0.213858) |
|
fli (0.202881) |
|
nep (0.183925) |
|
sag (0.182715) |
|
sto (0.179824) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
cje (0.165235) |
|
csp (0.161186) |
|
eli (0.151814) |
|
pty (0.142714) |
|
che (0.136314) |
|
spc (0.113366) |
|
cty (0.10408) |
