Ss1.1-rpigca0_009315.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAAATACAGAAATGAAGAGTGTGACCCAGGTGGCTGTCTCCTTGAACTGACAACGCAG CTGACCATAATCATGGGAGGAAAAGCAATCTGGAATAACATACAAGAGGTGTTACTTCCT TGGATCATGAATCTAATTGGACGGTGTCGCACAGTTTCGGGAGCAGAAATGAGAACCCCA AGATGGGAGCAGGACTACCATCTGCAGCCCATGGGCAAACTGGGATTATTTTATGAATAT CTGGAAATGATTATTCAGTTTGGGTTCGTCACCTTATTTGTGGCCTCTTTTCCATTGGCC CCTCTGTTGGCTCTGGTGAACAATATATTGGAAATAAGAGTGGACGCCTGGAAACTGACT ACCCAGTATAGACGCATGGTACCAGAAAAAGCCCAGGACATCGGAGCATGGCAGCCCATC ATGCAAGGAATAGCGATTCTGGCTGTGGTGACCAATGCCATGATCATTGCTTTCACGTCC GACATGATCCCCCGCCTGGTGTATTACTGGTCCTTCTCTGTCCCGCCCTATGGGGACCAC CCACACTACACCATGGAGGGCTACATCAACAACACTCTCTCCTACTACAGGGTTGCTGAC TTCAGAGGCAGGGAAAATCCATACACTGGGCTTGGTAACTATACCACATGCAGGTATCGT GATTTCCGGAACCCTCCTGGGCACCCACAAGAGTATAAACACAATATCTACTATTGGCAT GTGATTGCAGCCAAGCTGGCTTTCATCATTGTCATGGAGCACGTCATATACTCTGTGAAG TTTATCATTTCATACACGATTCCAGATGTGTCCAAGAGCACGAAGAGCAAGATCAAGAGG GAAAAATACCTAACTCAGAAGCTGCTTCGTGAGAATCACCTCAAAGATGTGACCAAAAAC ATAGGGGTCATAGTGGAGAAGATGGTAGAAGTGGTAGATAACAATTTACGACCAAAAGTA GATTAAGAAGAGCTTTATGTTCTGAAAAGCACTTTAAAGAGTTTTTAGCTCTGTCAAAAT ATATTATGAATCACTAATGAGAAAAATCACTTTGGCAAATTGAAGGCTTAAGCCTTGCCA TTTTCATGCAGATTATTTTCCAGTTTCAGCTGGCCATGCAGGAACTGGAAAACGTAAAAT TTAGATCAAGGAGGGCCTAAAACTAACCACCTGGAAAGCCAAAAATGTTACTCTTTTGAT AAATGCCAATTTTCGTAATACTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAAATACAGAAATGAAGAGTGTGACCCAGGTGGCTGTCTCCTTGAACTGACAACGCAG CTGACCATAATCATGGGAGGAAAAGCAATCTGGAATAACATACAAGAGGTGTTACTTCCT TGGATCATGAATCTAATTGGACGGTGTCGCACAGTTTCGGGAGCAGAAATGAGAACCCCA AGATGGGAGCAGGACTACCATCTGCAGCCCATGGGCAAACTGGGATTATTTTATGAATAT CTGGAAATGATTATTCAGTTTGGGTTCGTCACCTTATTTGTGGCCTCTTTTCCATTGGCC CCTCTGTTGGCTCTGGTGAACAATATATTGGAAATAAGAGTGGACGCCTGGAAACTGACT ACCCAGTATAGACGCATGGTACCAGAAAAAGCCCAGGACATCGGAGCATGGCAGCCCATC ATGCAAGGAATAGCGATTCTGGCTGTGGTGACCAATGCCATGATCATTGCTTTCACGTCC GACATGATCCCCCGCCTGGTGTATTACTGGTCCTTCTCTGTCCCGCCCTATGGGGACCAC CCACACTACACCATGGAGGGCTACATCAACAACACTCTCTCCTACTACAGGGTTGCTGAC TTCAGAGGCAGGGAAAATCCATACACTGGGCTTGGTAACTATACCACATGCAGGTATCGT GATTTCCGGAACCCTCCTGGGCACCCACAAGAGTATAAACACAATATCTACTATTGGCAT GTGATTGCAGCCAAGCTGGCTTTCATCATTGTCATGGAGCACGTCATATACTCTGTGAAG TTTATCATTTCATACACGATTCCAGATGTGTCCAAGAGCACGAAGAGCAAGATCAAGAGG GAAAAATACCTAACTCAGAAGCTGCTTCGTGAGAATCACCTCAAAGATGTGACCAAAAAC ATAGGGGTCATAGTGGAGAAGATGGTAGAAGTGGTAGATAACAATTTACGACCAAAAGTA GATTAAGAAGAGCTTTATGTTCTGAAAAGCACTTTAAAGAGTTTTTAGCTCTGTCAAAAT ATATTATGAATCACTAATGAGAAAAATCACTTTGGCAAATTGAAGGCTTAAGCCTTGCCA TTTTCATGCAGATTATTTTCCAGTTTCAGCTGGCCATGCAGGAACTGGAAAACGTAAAAT TTAGATCAAGGAGGGCCTAAAACTAACCACCTGGAAAGCCAAAAATGTTACTCTTTTGAT AAATGCCAATTTTCGTAATACTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1033-1182, - strand, RNAz p=0.999462 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1033-1182, - strand, RNAz p=0.999462 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 20-122, gnl|bosTau2|chr14 (33635467-33635569) | |
| 20-122, gnl|canFam2|chr27 (11924151-11924007) | |
| 20-122, gnl|danRer3|chrUn (91896783-91896667) | |
| 20-122, gnl|echTel1|scaffold_316955 (147097-147237) | |
| 20-122, gnl|fr1|chrUn (138354511-138354625) | |
| 20-122, gnl|galGal2|chr1 (27571685-27571808) | |
| 20-122, gnl|hg17|chr12 (44083470-44083615) | |
| 20-122, gnl|Hg17|chr12 (44083487-44083589) | |
| 20-122, gnl|loxAfr1|scaffold_5268 (49303-49194) | |
| 20-122, gnl|mm7|chr15 (95950911-95951055) | |
| 20-122, gnl|Mm7|chr15 (95950928-95951030) | |
| 20-122, gnl|monDom2|scaffold_10 (68664706-68664843) | |
| 20-122, gnl|oryCun1|scaffold_194039 (38728-38866) | |
| 20-122, gnl|panTro1|chr10 (44711623-44711768) | |
| 20-122, gnl|rheMac2|chr11 (42411606-42411751) | |
| 20-122, gnl|rn3|chr7 (134675948-134676091) | |
| 20-122, gnl|tetNig1|chr19 (3588586-3588473) | |
| 20-122, gnl|xenTro1|scaffold_66 (2101523-2101668) | |
| 251-457, gnl|bosTau2|chr14 (33649260-33649466) | |
| 251-457, gnl|canFam2|chr27 (11908867-11908613) | |
| 251-457, gnl|danRer3|chrUn (91895099-91894841) | |
| 251-457, gnl|dasNov1|scaffold_124824 (5603-5355) | |
| 251-457, gnl|echTel1|scaffold_288436 (8090-8344) | |
| 251-457, gnl|fr1|chrUn (138355150-138355388) | |
| 251-457, gnl|galGal2|chr1 (27575359-27575618) | |
| 251-457, gnl|hg17|chr12 (44096737-44096991) | |
| 251-457, gnl|Hg17|chr12 (44096749-44096955) | |
| 251-457, gnl|loxAfr1|scaffold_5268 (40512-40290) | |
| 251-457, gnl|mm7|chr15 (95963135-95963361) | |
| 251-457, gnl|Mm7|chr15 (95963147-95963353) | |
| 251-457, gnl|monDom2|scaffold_10 (68670657-68670874) | |
| 251-457, gnl|oryCun1|scaffold_146329 (4081-3853) | |
| 251-457, gnl|panTro1|chr10 (44724934-44725289) | |
| 251-457, gnl|rheMac2|chr11 (42424869-42425123) | |
| 251-457, gnl|rn3|chr7 (134687801-134688054) | |
| 251-457, gnl|tetNig1|chr19 (3587930-3587719) | |
| 251-457, gnl|xenTro1|scaffold_66 (2106091-2106326) | |
| 758-1221, gnl|bosTau2|chr14 (33661452-33661924) | |
| 758-1221, gnl|Hg17|chr12 (44109153-44109616) | |
| 758-1221, gnl|Mm7|chr15 (95973564-95974029) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-122, gnl|bosTau2|chr14 (33635467-33635569) | |
| 20-122, gnl|canFam2|chr27 (11924151-11924007) | |
| 20-122, gnl|danRer3|chrUn (91896783-91896667) | |
| 20-122, gnl|echTel1|scaffold_316955 (147097-147237) | |
| 20-122, gnl|fr1|chrUn (138354511-138354625) | |
| 20-122, gnl|galGal2|chr1 (27571685-27571808) | |
| 20-122, gnl|hg17|chr12 (44083470-44083615) | |
| 20-122, gnl|Hg17|chr12 (44083487-44083589) | |
| 20-122, gnl|loxAfr1|scaffold_5268 (49303-49194) | |
| 20-122, gnl|mm7|chr15 (95950911-95951055) | |
| 20-122, gnl|Mm7|chr15 (95950928-95951030) | |
| 20-122, gnl|monDom2|scaffold_10 (68664706-68664843) | |
| 20-122, gnl|oryCun1|scaffold_194039 (38728-38866) | |
| 20-122, gnl|panTro1|chr10 (44711623-44711768) | |
| 20-122, gnl|rheMac2|chr11 (42411606-42411751) | |
| 20-122, gnl|rn3|chr7 (134675948-134676091) | |
| 20-122, gnl|tetNig1|chr19 (3588586-3588473) | |
| 20-122, gnl|xenTro1|scaffold_66 (2101523-2101668) | |
| 251-457, gnl|bosTau2|chr14 (33649260-33649466) | |
| 251-457, gnl|canFam2|chr27 (11908867-11908613) | |
| 251-457, gnl|danRer3|chrUn (91895099-91894841) | |
| 251-457, gnl|dasNov1|scaffold_124824 (5603-5355) | |
| 251-457, gnl|echTel1|scaffold_288436 (8090-8344) | |
| 251-457, gnl|fr1|chrUn (138355150-138355388) | |
| 251-457, gnl|galGal2|chr1 (27575359-27575618) | |
| 251-457, gnl|hg17|chr12 (44096737-44096991) | |
| 251-457, gnl|Hg17|chr12 (44096749-44096955) | |
| 251-457, gnl|loxAfr1|scaffold_5268 (40512-40290) | |
| 251-457, gnl|mm7|chr15 (95963135-95963361) | |
| 251-457, gnl|Mm7|chr15 (95963147-95963353) | |
| 251-457, gnl|monDom2|scaffold_10 (68670657-68670874) | |
| 251-457, gnl|oryCun1|scaffold_146329 (4081-3853) | |
| 251-457, gnl|panTro1|chr10 (44724934-44725289) | |
| 251-457, gnl|rheMac2|chr11 (42424869-42425123) | |
| 251-457, gnl|rn3|chr7 (134687801-134688054) | |
| 251-457, gnl|tetNig1|chr19 (3587930-3587719) | |
| 251-457, gnl|xenTro1|scaffold_66 (2106091-2106326) | |
| 758-1221, gnl|bosTau2|chr14 (33661452-33661924) | |
| 758-1221, gnl|Hg17|chr12 (44109153-44109616) | |
| 758-1221, gnl|Mm7|chr15 (95973564-95974029) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.478583) | |
| cbl (0.344392) | |
| nje (0.16592) |