Non-Coding RNA Search

Ss1.1-rpigca0_009333.5

Sequence:


               
               CATTCTCACCCCAGAGACATGTGGCTACCTCCCCCGCAGCCCAGGGAGCCTGGGTGACAG
ACAGACACCATAAGGCTGAGTTCTGAGCCTCCCTTCCAAAGTGGCAGAATGCAGTGCTTT
CTCTCTATTTCCTTGGAATCTGAGCAGGTAGGTTCATCTTTTAGACATAAGCCTGAGCGA
GTGCTTCAAGGATAGAATACCCTGAGATTGGAAATTAAAAATTTAATGTTGTTTTAAATA
GAAGTGGATTAAATAAGGAACCAAATAATTTCCAGGGTAAATGGCAAAGGATAGATTCTG
CTGTAAGTGAAGTACTCTGCTGATAACTACTCCTATTTTGTTTTTTGTTTTTTTTCCTCC
TTTTTTCCCTTGAACTTGGGATCCCTGTATATCACAGACAAGCATCAAAGCCCAAGATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTCTCACCCCAGAGACATGTGGCTACCTCCCCCGCAGCCCAGGGAGCCTGGGTGACAG
ACAGACACCATAAGGCTGAGTTCTGAGCCTCCCTTCCAAAGTGGCAGAATGCAGTGCTTT
CTCTCTATTTCCTTGGAATCTGAGCAGGTAGGTTCATCTTTTAGACATAAGCCTGAGCGA
GTGCTTCAAGGATAGAATACCCTGAGATTGGAAATTAAAAATTTAATGTTGTTTTAAATA
GAAGTGGATTAAATAAGGAACCAAATAATTTCCAGGGTAAATGGCAAAGGATAGATTCTG
CTGTAAGTGAAGTACTCTGCTGATAACTACTCCTATTTTGTTTTTTGTTTTTTTTCCTCC
TTTTTTCCCTTGAACTTGGGATCCCTGTATATCACAGACAAGCATCAAAGCCCAAGATTC

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-420, gnl|bosTau2|chr22 (24276954-24277368)
               

               
               1-420, gnl|canFam2|chr20 (23586051-23585396)
               

               
               1-420, gnl|dasNov1|scaffold_111 (157761-157132)
               

               
               1-420, gnl|echTel1|scaffold_317135 (92600-91949)
               

               
               1-420, gnl|hg17|chr3 (71562017-71562636)
               

               
               1-420, gnl|Hg17|chr3 (71562705-71562291)
               

               
               1-420, gnl|loxAfr1|scaffold_447 (4648-5278)
               

               
               1-420, gnl|mm7|chr6 (99464766-99465399)
               

               
               1-420, gnl|Mm7|chr6 (99465457-99465052)
               

               
               1-420, gnl|monDom2|scaffold_5 (19128031-19128652)
               

               
               1-420, gnl|oryCun1|scaffold_213555 (465326-465938)
               

               
               1-420, gnl|panTro1|chr2 (73504177-73504795)
               

               
               1-420, gnl|rheMac2|chr2 (64784731-64784108)
               

               
               1-420, gnl|rn3|chr4 (134467216-134467847)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-420, gnl|bosTau2|chr22 (24276954-24277368)
               

               
               1-420, gnl|canFam2|chr20 (23586051-23585396)
               

               
               1-420, gnl|dasNov1|scaffold_111 (157761-157132)
               

               
               1-420, gnl|echTel1|scaffold_317135 (92600-91949)
               

               
               1-420, gnl|hg17|chr3 (71562017-71562636)
               

               
               1-420, gnl|Hg17|chr3 (71562705-71562291)
               

               
               1-420, gnl|loxAfr1|scaffold_447 (4648-5278)
               

               
               1-420, gnl|mm7|chr6 (99464766-99465399)
               

               
               1-420, gnl|Mm7|chr6 (99465457-99465052)
               

               
               1-420, gnl|monDom2|scaffold_5 (19128031-19128652)
               

               
               1-420, gnl|oryCun1|scaffold_213555 (465326-465938)
               

               
               1-420, gnl|panTro1|chr2 (73504177-73504795)
               

               
               1-420, gnl|rheMac2|chr2 (64784731-64784108)
               

               
               1-420, gnl|rn3|chr4 (134467216-134467847)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               clu (0.717875)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.717875)

	1-420, gnl\|bosTau2\|chr22 (24276954-24277368)
	1-420, gnl\|canFam2\|chr20 (23586051-23585396)
	1-420, gnl\|dasNov1\|scaffold_111 (157761-157132)
	1-420, gnl\|echTel1\|scaffold_317135 (92600-91949)
	1-420, gnl\|hg17\|chr3 (71562017-71562636)
	1-420, gnl\|Hg17\|chr3 (71562705-71562291)
	1-420, gnl\|loxAfr1\|scaffold_447 (4648-5278)
	1-420, gnl\|mm7\|chr6 (99464766-99465399)
	1-420, gnl\|Mm7\|chr6 (99465457-99465052)
	1-420, gnl\|monDom2\|scaffold_5 (19128031-19128652)
	1-420, gnl\|oryCun1\|scaffold_213555 (465326-465938)
	1-420, gnl\|panTro1\|chr2 (73504177-73504795)
	1-420, gnl\|rheMac2\|chr2 (64784731-64784108)
	1-420, gnl\|rn3\|chr4 (134467216-134467847)