Non-Coding RNA Search

Ss1.1-rpigca0_009577.5

Sequence:


               
               CTGCGACAGAAAGTACTGCCCCTCCTCAAAACAGCCATTAAGGATTGTCCAGTTGGCAAA
GACTGGAAGCTAAACTGCCGACCTTGCCCACCTAGACTCCTTTTCCTCTTTCAACTCAAT
GGAGCACTCAAGGTGGAACCCCCTCGGAACCAAGACCCAGCTCATCCAGACAAGCCCAAG
AAGCATTCTCCCAAAAGGAGACTGCAGCATGCCTTGGAGGACCAGATCTATAGAATCTTC
CGGAAGAGTCGTGTCTTGACTAATCAGAGTATCAACTGTCTCTTTACTGTGCCTGCCAAT
CAAGCTTTTGTGTACATAGTGCCTGGAAGCCAGGAGGAGGACCCAGTAGGCATGTTGCTG
GACCAACTTAGAAGTCATTGTACTGTGAAGGACCCTGAATCTTTGCTGGTTCCTGCACCC
CTTTCTGGGTCCAGGCGATACCAGGTGATGAGGCAGCAGAGCCGACAACAGCTTTCTTTC
CACATTGACACCAGCAGTTCCAGTTCTTCAGGGCAGCTAGTGGATTTCACTCTTCGGGAA
TTCCTATGGCAGCATGTAGAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCGACAGAAAGTACTGCCCCTCCTCAAAACAGCCATTAAGGATTGTCCAGTTGGCAAA
GACTGGAAGCTAAACTGCCGACCTTGCCCACCTAGACTCCTTTTCCTCTTTCAACTCAAT
GGAGCACTCAAGGTGGAACCCCCTCGGAACCAAGACCCAGCTCATCCAGACAAGCCCAAG
AAGCATTCTCCCAAAAGGAGACTGCAGCATGCCTTGGAGGACCAGATCTATAGAATCTTC
CGGAAGAGTCGTGTCTTGACTAATCAGAGTATCAACTGTCTCTTTACTGTGCCTGCCAAT
CAAGCTTTTGTGTACATAGTGCCTGGAAGCCAGGAGGAGGACCCAGTAGGCATGTTGCTG
GACCAACTTAGAAGTCATTGTACTGTGAAGGACCCTGAATCTTTGCTGGTTCCTGCACCC
CTTTCTGGGTCCAGGCGATACCAGGTGATGAGGCAGCAGAGCCGACAACAGCTTTCTTTC
CACATTGACACCAGCAGTTCCAGTTCTTCAGGGCAGCTAGTGGATTTCACTCTTCGGGAA
TTCCTATGGCAGCATGTAGAGCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.953773
               

               
               320-439, + strand, RNAz p=0.619125

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.953773
               

               
               320-439, + strand, RNAz p=0.619125

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC020957, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC020957, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-563, gnl|bosTau2|chr19 (4505091-4505653)
               

               
               1-563, gnl|Hg17|chr17 (54642891-54643453)
               

               
               1-563, gnl|Mm7|chr11 (87155965-87155403)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-563, gnl|bosTau2|chr19 (4505091-4505653)
               

               
               1-563, gnl|Hg17|chr17 (54642891-54643453)
               

               
               1-563, gnl|Mm7|chr11 (87155965-87155403)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.478583)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.478583)
               

               
               ebs (0.118301)

	1-119, - strand, RNAz p=0.953773
	320-439, + strand, RNAz p=0.619125

	1-563, gnl\|bosTau2\|chr19 (4505091-4505653)
	1-563, gnl\|Hg17\|chr17 (54642891-54643453)
	1-563, gnl\|Mm7\|chr11 (87155965-87155403)