Non-Coding RNA Search

Ss1.1-rpigca0_009718.5

Sequence:


               
               AGAAGAAAAGTATTCAGGGGTAACCAGGTCTCCCCACATTCTGAGAGTTCCAAACCCAGT
AATTCACATGCCAGTGAAAATAGAAACAGCCCCTTGCTAGGCATGACCACAGAAAATGAC
AGTTATGTGGCAGGGTCTGCACACGCCATACACCTTGATTTGGAAAACTAGTCATTAAAT
GAACCCACTGCCTTAAATGTCTTGAATGTTGCAGTCAAGTGTCTGTCATGTGTTGACGTC
CACACAGAAATCCGTCTTGTTGAGAGCCTTAGACCCTCACCCATGGCCCCTTCTTAGTTG
GCATCCATGGTCTCATTTGGAACAGGGGGCAGAGAGGACTGAAATTCTAGAATATTCCAA
GGGAATCAAACCAGGGAGTTGTGCCCCACTTCTGATGGAGTGAAGACACTTGGCAGGCTT
GAGCCAGACGCTTCGCCTAGTAGTTGCAGAGACCGTGAGCGCCCTTGCACTGAGCAGGGG
CAGAGCTGCTGGGGGTGGAGCCCGGTTCCTGCCACCATAGACACAGAATGTCTCGGGAGG
GCAGCAGGCCCTCGCAGGGCTCTGGATTCTGTGCACCTTATTTGACCACGCTCCAAAATT
CCATTCTTACTTTAACCCTTGATTCTGCTTTATGTATATAATCAAAATATCTATATCAAT
ATATATTTTTTAATCACCTACATGTAAATGAAGCAATAGAATTCTAACGTAAGGCCAAGA
AATGAGATGAATGTTTGGGGTTTATGTTTTTTGAGGTAAATACGGGTATTGTTTTTAATT
ATTACCTTTTATTAAATTGTGGGCTTTAAAACCTAATGAAACCTATCAGCTATTTCTCTG
TGCCATAGACTTCCCATGTTACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGAAAAGTATTCAGGGGTAACCAGGTCTCCCCACATTCTGAGAGTTCCAAACCCAGT
AATTCACATGCCAGTGAAAATAGAAACAGCCCCTTGCTAGGCATGACCACAGAAAATGAC
AGTTATGTGGCAGGGTCTGCACACGCCATACACCTTGATTTGGAAAACTAGTCATTAAAT
GAACCCACTGCCTTAAATGTCTTGAATGTTGCAGTCAAGTGTCTGTCATGTGTTGACGTC
CACACAGAAATCCGTCTTGTTGAGAGCCTTAGACCCTCACCCATGGCCCCTTCTTAGTTG
GCATCCATGGTCTCATTTGGAACAGGGGGCAGAGAGGACTGAAATTCTAGAATATTCCAA
GGGAATCAAACCAGGGAGTTGTGCCCCACTTCTGATGGAGTGAAGACACTTGGCAGGCTT
GAGCCAGACGCTTCGCCTAGTAGTTGCAGAGACCGTGAGCGCCCTTGCACTGAGCAGGGG
CAGAGCTGCTGGGGGTGGAGCCCGGTTCCTGCCACCATAGACACAGAATGTCTCGGGAGG
GCAGCAGGCCCTCGCAGGGCTCTGGATTCTGTGCACCTTATTTGACCACGCTCCAAAATT
CCATTCTTACTTTAACCCTTGATTCTGCTTTATGTATATAATCAAAATATCTATATCAAT
ATATATTTTTTAATCACCTACATGTAAATGAAGCAATAGAATTCTAACGTAAGGCCAAGA
AATGAGATGAATGTTTGGGGTTTATGTTTTTTGAGGTAAATACGGGTATTGTTTTTAATT
ATTACCTTTTATTAAATTGTGGGCTTTAAAACCTAATGAAACCTATCAGCTATTTCTCTG
TGCCATAGACTTCCCATGTTACCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               441-593, - strand, RNAz p=0.667051
               

               
               470-587, + strand, RNAz p=0.890555

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-593, - strand, RNAz p=0.667051
               

               
               470-587, + strand, RNAz p=0.890555

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005808, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005808, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-863, gnl|bosTau2|chr22 (9002451-9001607)
               

               
               1-863, gnl|canFam2|chr23 (10768879-10769951)
               

               
               1-863, gnl|dasNov1|scaffold_169659 (5148-4217)
               

               
               1-863, gnl|echTel1|scaffold_219391 (14942-15987)
               

               
               1-863, gnl|hg17|chr3 (37998714-37999814)
               

               
               1-863, gnl|Hg17|chr3 (37999135-38000009)
               

               
               1-863, gnl|loxAfr1|scaffold_132500 (5346-4271)
               

               
               1-863, gnl|mm7|chr9 (118722230-118723237)
               

               
               1-863, gnl|Mm7|chr9 (118722612-118723417)
               

               
               1-863, gnl|monDom2|scaffold_390 (50729-49773)
               

               
               1-863, gnl|panTro1|chr2 (39104125-39105219)
               

               
               1-863, gnl|rheMac2|chr2 (98561344-98560269)
               

               
               1-863, gnl|rn3|chr8 (124011236-124012246)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-863, gnl|bosTau2|chr22 (9002451-9001607)
               

               
               1-863, gnl|canFam2|chr23 (10768879-10769951)
               

               
               1-863, gnl|dasNov1|scaffold_169659 (5148-4217)
               

               
               1-863, gnl|echTel1|scaffold_219391 (14942-15987)
               

               
               1-863, gnl|hg17|chr3 (37998714-37999814)
               

               
               1-863, gnl|Hg17|chr3 (37999135-38000009)
               

               
               1-863, gnl|loxAfr1|scaffold_132500 (5346-4271)
               

               
               1-863, gnl|mm7|chr9 (118722230-118723237)
               

               
               1-863, gnl|Mm7|chr9 (118722612-118723417)
               

               
               1-863, gnl|monDom2|scaffold_390 (50729-49773)
               

               
               1-863, gnl|panTro1|chr2 (39104125-39105219)
               

               
               1-863, gnl|rheMac2|chr2 (98561344-98560269)
               

               
               1-863, gnl|rn3|chr8 (124011236-124012246)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               liv (0.146284)
               

               
               cst (0.140036)
               

               
               cbr (0.127975)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               cbr (0.127975)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	441-593, - strand, RNAz p=0.667051
	470-587, + strand, RNAz p=0.890555

	1-863, gnl\|bosTau2\|chr22 (9002451-9001607)
	1-863, gnl\|canFam2\|chr23 (10768879-10769951)
	1-863, gnl\|dasNov1\|scaffold_169659 (5148-4217)
	1-863, gnl\|echTel1\|scaffold_219391 (14942-15987)
	1-863, gnl\|hg17\|chr3 (37998714-37999814)
	1-863, gnl\|Hg17\|chr3 (37999135-38000009)
	1-863, gnl\|loxAfr1\|scaffold_132500 (5346-4271)
	1-863, gnl\|mm7\|chr9 (118722230-118723237)
	1-863, gnl\|Mm7\|chr9 (118722612-118723417)
	1-863, gnl\|monDom2\|scaffold_390 (50729-49773)
	1-863, gnl\|panTro1\|chr2 (39104125-39105219)
	1-863, gnl\|rheMac2\|chr2 (98561344-98560269)
	1-863, gnl\|rn3\|chr8 (124011236-124012246)

	liv (0.146284)
	cst (0.140036)
	cbr (0.127975)
	clu (0.119646)
	ldo (0.0970026)