Non-Coding RNA Search

Ss1.1-rpigca0_009724.5

Sequence:


               
               TGGTCAAGAAGGCCACCGGGGCGCAGGTGTGAGGTCCCGAAGGCTCACGCCCTTCAGCAG
CCACCGACCCCCCCTCCAGCACCCGTTTTAATACCACAGGGACAACGGGAACGTTACTGA
CTCTGGTGCCTTATTTTGTAGGGACCAGAAGTGCTGCGTGTTCAGGCCTCTGGCTGTCTT
CCCTTCTCCCCTGTCTCTGTCTCCTTCCTCTTCTCCACCCACACCCCCACTTTCACTGCC
ACATTCGTCTGGTTTGTCTCTTCCACCATCACCTCCCTGCACGTCTCTTCCTTTGTCTGT
CTGTCTTTTTCTCTCCCTCTCTCCTCCCTCCTTCTACACACGTCCTGTAGTTTCAACTGA
AGATGTCTATTACAATCACTGTCTGTCTGTCAGGGGTGGCCCTGCTGCCCCTCAGAATCC
TGGTGCCTTGAAGTTTTCTGTGCATCTGTCCGTTCCCCCTGTGGCCCAGGCCAGAGCTTC
AGCATGGGTGCAGGGGGTCTGGGTAGGGCGACCATCCTGCCCCCCTCCTGGCCTGGTCTT
CCCAGCCCTCACCCTGTCCCCAGGAAGCCCCCAGCCTCACCCACGCCGGCCCCTCTCAGC
CCAGGCAGCTATGGCTGCAGGCCCAGGGCCATTGCCCTTCTCTAACCCCTGCCCGGCCCC
AGGCCTGCTCTCATACCTTAGCTCTCTCCCCCCGCCCAGGGGCACAGAGGCAAGGCCTCC
TGTGTATAGCAGCTCCCTCAGTTTACTACTGCCTTAGGAGGCCCCTGCTTGTGCTCAGGG
AAGTCCCCTTCCTGGACATGTCCCTACCAGGTGGAGGGGGGCTTGGTCCCAACTCTGCTA
CCCCTTTTCTGGGATCAGGATCTAGCCCTTCTGGGACTGGAAAGCGTGTAGACCCTCTTC
CTGCTAGGGCTGTGCTGTCCTGGGTTTTGGGCCGGGTCCTTCCCAGGGCAAAGCTCCGCC
ACCCCTGTACAGAATCGAGTGCGGCAGACTGGCCAGACTCCATACCCCTGTGCCATCGTT
CTTCCTGGCCAGGGTGATAGGGTTCCAGCCATGGGGAAGCAGCCCCGTCCTCTGTCTCCT
TGCTGCAGTGGAGGCAGAAGAGCTCAGGGCCCAAGCATCCTGGCAGGGTCCCAGCCCCCC
ACCCCTTGCCCCAGCCTGTGTAGCTGTTCGTGCATGTGGATGCTGCATGTCTGGTCTGGG
GCTTGGATGCTGCACTGCCCCGCTGCCTGTCCCTTCTGGTAAAATAAATATCTGGTCATG
CCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCAAGAAGGCCACCGGGGCGCAGGTGTGAGGTCCCGAAGGCTCACGCCCTTCAGCAG
CCACCGACCCCCCCTCCAGCACCCGTTTTAATACCACAGGGACAACGGGAACGTTACTGA
CTCTGGTGCCTTATTTTGTAGGGACCAGAAGTGCTGCGTGTTCAGGCCTCTGGCTGTCTT
CCCTTCTCCCCTGTCTCTGTCTCCTTCCTCTTCTCCACCCACACCCCCACTTTCACTGCC
ACATTCGTCTGGTTTGTCTCTTCCACCATCACCTCCCTGCACGTCTCTTCCTTTGTCTGT
CTGTCTTTTTCTCTCCCTCTCTCCTCCCTCCTTCTACACACGTCCTGTAGTTTCAACTGA
AGATGTCTATTACAATCACTGTCTGTCTGTCAGGGGTGGCCCTGCTGCCCCTCAGAATCC
TGGTGCCTTGAAGTTTTCTGTGCATCTGTCCGTTCCCCCTGTGGCCCAGGCCAGAGCTTC
AGCATGGGTGCAGGGGGTCTGGGTAGGGCGACCATCCTGCCCCCCTCCTGGCCTGGTCTT
CCCAGCCCTCACCCTGTCCCCAGGAAGCCCCCAGCCTCACCCACGCCGGCCCCTCTCAGC
CCAGGCAGCTATGGCTGCAGGCCCAGGGCCATTGCCCTTCTCTAACCCCTGCCCGGCCCC
AGGCCTGCTCTCATACCTTAGCTCTCTCCCCCCGCCCAGGGGCACAGAGGCAAGGCCTCC
TGTGTATAGCAGCTCCCTCAGTTTACTACTGCCTTAGGAGGCCCCTGCTTGTGCTCAGGG
AAGTCCCCTTCCTGGACATGTCCCTACCAGGTGGAGGGGGGCTTGGTCCCAACTCTGCTA
CCCCTTTTCTGGGATCAGGATCTAGCCCTTCTGGGACTGGAAAGCGTGTAGACCCTCTTC
CTGCTAGGGCTGTGCTGTCCTGGGTTTTGGGCCGGGTCCTTCCCAGGGCAAAGCTCCGCC
ACCCCTGTACAGAATCGAGTGCGGCAGACTGGCCAGACTCCATACCCCTGTGCCATCGTT
CTTCCTGGCCAGGGTGATAGGGTTCCAGCCATGGGGAAGCAGCCCCGTCCTCTGTCTCCT
TGCTGCAGTGGAGGCAGAAGAGCTCAGGGCCCAAGCATCCTGGCAGGGTCCCAGCCCCCC
ACCCCTTGCCCCAGCCTGTGTAGCTGTTCGTGCATGTGGATGCTGCATGTCTGGTCTGGG
GCTTGGATGCTGCACTGCCCCGCTGCCTGTCCCTTCTGGTAAAATAAATATCTGGTCATG
CCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               306-416, - strand, RNAz p=0.624584
               

               
               491-881, - strand, RNAz p=0.999952
               

               
               1037-1136, - strand, RNAz p=0.982723

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               306-416, - strand, RNAz p=0.624584
               

               
               491-881, - strand, RNAz p=0.999952
               

               
               1037-1136, - strand, RNAz p=0.982723

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               581-861, - strand, RNAmicro p=0.999939
               

               
               721-816, + strand, RNAmicro p=0.999755
               

               
               503-599, + strand, RNAmicro p=0.989058

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               581-861, - strand, RNAmicro p=0.999939
               

               
               721-816, + strand, RNAmicro p=0.999755
               

               
               503-599, + strand, RNAmicro p=0.989058

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1263, gnl|bosTau2|chr19 (13795788-13794509)
               

               
               1-1263, gnl|Hg17|chr17 (24231736-24230484)
               

               
               1-1263, gnl|Mm7|chr11 (78140777-78142006)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1263, gnl|bosTau2|chr19 (13795788-13794509)
               

               
               1-1263, gnl|Hg17|chr17 (24231736-24230484)
               

               
               1-1263, gnl|Mm7|chr11 (78140777-78142006)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               clu (0.358938)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               ese (0.253004)
               

               
               ebs (0.236602)
               

               
               fbs (0.175346)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               eje (0.0988338)

	306-416, - strand, RNAz p=0.624584
	491-881, - strand, RNAz p=0.999952
	1037-1136, - strand, RNAz p=0.982723

	581-861, - strand, RNAmicro p=0.999939
	721-816, + strand, RNAmicro p=0.999755
	503-599, + strand, RNAmicro p=0.989058

	1-1263, gnl\|bosTau2\|chr19 (13795788-13794509)
	1-1263, gnl\|Hg17\|chr17 (24231736-24230484)
	1-1263, gnl\|Mm7\|chr11 (78140777-78142006)

	clu (0.358938)
	ese (0.253004)
	ebs (0.236602)
	fbs (0.175346)
	lnt (0.142308)
	ute (0.132784)
	eje (0.0988338)