Non-Coding RNA Search

Ss1.1-rpigca0_009788.5

Sequence:


               
               CACCACTTTGTTGGTCCCCCACCCAGGAACCCCAGCCCCCTCCTATTGTCAGGCAACATT
GTCATGCATCAGTATCACCAGATAACAAACATCCAATCTAAGTACTTTTAACAGACTCAT
GTTCCCTTGAAGTTGTAACCCTAGTCTTGGGTCACAGGAGCTGGCCAGCCCAACAAATAC
CTCAAGGACACAATGTGTAGTTACCTCCCTTTAGGCCTGCAGTCAGTAGTACATCCGACT
TGAAAAAAGTGGCTATACACACCCTGACCCTGAACATCTGACTCACCGGCGCTAGCATTA
CATCTTCACCCCAGCTCAAGAGCCTAACTCGGCAGCAAGAGCCTAACTAAGTCAGCAGCT
CAGGAACCACTGCTGATCCCAGCAGACAGTGTGGCACCAGCTCTTTCCTGGCTCTCATGG
TGGAGATGGGGGCAGGGAAAGACCAATGGGGACTGAAGACTTAGTTGGCTCTGCCCTTGA
AGATAAAAAGGAAAATAAGTAGTTCAGCCCTGGGTACAGGGATGTAAGAAGCCCAGAACA
AACCAGGACACAGGAAGAAAGGAGCAGAGACTACCCTGGGTTTTAATCCTGATGCTGAGG
TCAAAGGAAATGGAAAGACAAAAACCACCCTCATTCCATGAGGAATGACAGAACAGAAGA
GAATGTGAACACTTGAGAGCAGCTAGCCATGGGAAGTTAATGAGCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCACTTTGTTGGTCCCCCACCCAGGAACCCCAGCCCCCTCCTATTGTCAGGCAACATT
GTCATGCATCAGTATCACCAGATAACAAACATCCAATCTAAGTACTTTTAACAGACTCAT
GTTCCCTTGAAGTTGTAACCCTAGTCTTGGGTCACAGGAGCTGGCCAGCCCAACAAATAC
CTCAAGGACACAATGTGTAGTTACCTCCCTTTAGGCCTGCAGTCAGTAGTACATCCGACT
TGAAAAAAGTGGCTATACACACCCTGACCCTGAACATCTGACTCACCGGCGCTAGCATTA
CATCTTCACCCCAGCTCAAGAGCCTAACTCGGCAGCAAGAGCCTAACTAAGTCAGCAGCT
CAGGAACCACTGCTGATCCCAGCAGACAGTGTGGCACCAGCTCTTTCCTGGCTCTCATGG
TGGAGATGGGGGCAGGGAAAGACCAATGGGGACTGAAGACTTAGTTGGCTCTGCCCTTGA
AGATAAAAAGGAAAATAAGTAGTTCAGCCCTGGGTACAGGGATGTAAGAAGCCCAGAACA
AACCAGGACACAGGAAGAAAGGAGCAGAGACTACCCTGGGTTTTAATCCTGATGCTGAGG
TCAAAGGAAATGGAAAGACAAAAACCACCCTCATTCCATGAGGAATGACAGAACAGAAGA
GAATGTGAACACTTGAGAGCAGCTAGCCATGGGAAGTTAATGAGCAGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               269-539, - strand, RNAz p=0.999668
               

               
               465-560, - strand, RNAz p=0.747275

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-539, - strand, RNAz p=0.999668
               

               
               465-560, - strand, RNAz p=0.747275

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-695, gnl|bosTau2|chr21 (34522751-34522072)
               

               
               1-695, gnl|canFam2|chr30 (13529648-13530537)
               

               
               1-695, gnl|dasNov1|scaffold_16689 (3558-4380)
               

               
               1-695, gnl|echTel1|scaffold_282561 (83618-82750)
               

               
               1-695, gnl|hg17|chr15 (41873538-41874416)
               

               
               1-695, gnl|Hg17|chr15 (41874590-41873913)
               

               
               1-695, gnl|mm7|chr2 (121191908-121192738)
               

               
               1-695, gnl|Mm7|chr2 (121192910-121192285)
               

               
               1-695, gnl|monDom2|scaffold_53 (10281756-10280826)
               

               
               1-695, gnl|oryCun1|scaffold_175340 (51234-52046)
               

               
               1-695, gnl|panTro1|chr16 (41783826-41784704)
               

               
               1-695, gnl|rheMac2|chr7 (22186858-22187721)
               

               
               1-695, gnl|rn3|chr3 (108157697-108158526)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-695, gnl|bosTau2|chr21 (34522751-34522072)
               

               
               1-695, gnl|canFam2|chr30 (13529648-13530537)
               

               
               1-695, gnl|dasNov1|scaffold_16689 (3558-4380)
               

               
               1-695, gnl|echTel1|scaffold_282561 (83618-82750)
               

               
               1-695, gnl|hg17|chr15 (41873538-41874416)
               

               
               1-695, gnl|Hg17|chr15 (41874590-41873913)
               

               
               1-695, gnl|mm7|chr2 (121191908-121192738)
               

               
               1-695, gnl|Mm7|chr2 (121192910-121192285)
               

               
               1-695, gnl|monDom2|scaffold_53 (10281756-10280826)
               

               
               1-695, gnl|oryCun1|scaffold_175340 (51234-52046)
               

               
               1-695, gnl|panTro1|chr16 (41783826-41784704)
               

               
               1-695, gnl|rheMac2|chr7 (22186858-22187721)
               

               
               1-695, gnl|rn3|chr3 (108157697-108158526)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)
               

               
               cty (0.10408)

	269-539, - strand, RNAz p=0.999668
	465-560, - strand, RNAz p=0.747275

	1-695, gnl\|bosTau2\|chr21 (34522751-34522072)
	1-695, gnl\|canFam2\|chr30 (13529648-13530537)
	1-695, gnl\|dasNov1\|scaffold_16689 (3558-4380)
	1-695, gnl\|echTel1\|scaffold_282561 (83618-82750)
	1-695, gnl\|hg17\|chr15 (41873538-41874416)
	1-695, gnl\|Hg17\|chr15 (41874590-41873913)
	1-695, gnl\|mm7\|chr2 (121191908-121192738)
	1-695, gnl\|Mm7\|chr2 (121192910-121192285)
	1-695, gnl\|monDom2\|scaffold_53 (10281756-10280826)
	1-695, gnl\|oryCun1\|scaffold_175340 (51234-52046)
	1-695, gnl\|panTro1\|chr16 (41783826-41784704)
	1-695, gnl\|rheMac2\|chr7 (22186858-22187721)
	1-695, gnl\|rn3\|chr3 (108157697-108158526)