Non-Coding RNA Search

Ss1.1-rpigca0_011234.5.5

Sequence:


               
               TGGACGAGCACCGGAGGCGGCAGCATTTCAGCCACCGCTGCCAGCTCTGTGACTTTGCTG
CCCGGGAGCGGGTGGGCCTGGTGAAGCACTACTTGGAACAGCATGAGGAGACCTCGGCCA
CAGCAGTGGCCTCAGCTGGGGATGGGGACGCCGGCCAGCCCCCTCTACGCTGCCCCTTTT
GTGACTTTGCGTGCCGCCATCAGCTCGTGCTAGATCACCACGTGAAAGGGCACGGGGGCA
CCCGGCTGTACAAATGCACTGACTGCGCTTACAGCACCAAGAACCGGCAGAAGATCACCT
GGCACAGCCGCATCCACACTGGAGAAAAGCCCTACCGCTGTCACCTCTGTCCCTATGCCT
GTGCTGACCCCTCCCGCCTCAAGTATCACATGCGGATCCACAAGGAGGAACGGAAGTACC
TGTGCCCCGACTGTGGCTACAAGTGCAAGTGGGTCAACCAGCTCAAGTACCACATGACCA
AGCACACAGGACAGTCGGGGTGGTTTGGACAGGCCCAAGGGGTTCCCCTGTTACCTGAGG
TGGCGTCTGTCCTTGCTCACAGTCATGGAACATCAGTGTTCACATCGAGGGGAATGGGTA
GGCTGAAAAGCCAGAATAGCTTCCCAACCCACTGAAAACCTATCAGAATCAGGGGAGATA
TGAAGCTGAGAGTCTGGGATGCATCCTTTGCAAAAGCTTCCCTGGGGATTGTGGCACAAG
GCCGCCCACCTGCTGCTGAGAACCCCCCAACTCAAACATGAGGGACGGAGTGGGTCTGCC
TGGTCCATACAGAGACAGGATGAAACTGTCATGAGTGGGGAGAAGAAAGTAGAAGGGTCA
CCCGTGTTAACTTGTCCTTCTGCTGGCTGCAGAGTCCATGATGAGTGTGACCGATGGCGT
GCCTGGGATTGTTGCATGTGGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACGAGCACCGGAGGCGGCAGCATTTCAGCCACCGCTGCCAGCTCTGTGACTTTGCTG
CCCGGGAGCGGGTGGGCCTGGTGAAGCACTACTTGGAACAGCATGAGGAGACCTCGGCCA
CAGCAGTGGCCTCAGCTGGGGATGGGGACGCCGGCCAGCCCCCTCTACGCTGCCCCTTTT
GTGACTTTGCGTGCCGCCATCAGCTCGTGCTAGATCACCACGTGAAAGGGCACGGGGGCA
CCCGGCTGTACAAATGCACTGACTGCGCTTACAGCACCAAGAACCGGCAGAAGATCACCT
GGCACAGCCGCATCCACACTGGAGAAAAGCCCTACCGCTGTCACCTCTGTCCCTATGCCT
GTGCTGACCCCTCCCGCCTCAAGTATCACATGCGGATCCACAAGGAGGAACGGAAGTACC
TGTGCCCCGACTGTGGCTACAAGTGCAAGTGGGTCAACCAGCTCAAGTACCACATGACCA
AGCACACAGGACAGTCGGGGTGGTTTGGACAGGCCCAAGGGGTTCCCCTGTTACCTGAGG
TGGCGTCTGTCCTTGCTCACAGTCATGGAACATCAGTGTTCACATCGAGGGGAATGGGTA
GGCTGAAAAGCCAGAATAGCTTCCCAACCCACTGAAAACCTATCAGAATCAGGGGAGATA
TGAAGCTGAGAGTCTGGGATGCATCCTTTGCAAAAGCTTCCCTGGGGATTGTGGCACAAG
GCCGCCCACCTGCTGCTGAGAACCCCCCAACTCAAACATGAGGGACGGAGTGGGTCTGCC
TGGTCCATACAGAGACAGGATGAAACTGTCATGAGTGGGGAGAAGAAAGTAGAAGGGTCA
CCCGTGTTAACTTGTCCTTCTGCTGGCTGCAGAGTCCATGATGAGTGTGACCGATGGCGT
GCCTGGGATTGTTGCATGTGGGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               210-301, - strand, RNAz p=0.753062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-301, - strand, RNAz p=0.753062

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-383, gnl|bosTau2|chr2 (59484712-59485091)
               

               
               1-383, gnl|canFam2|chr37 (28247376-28247792)
               

               
               1-383, gnl|danRer3|chrUn (99245095-99244724)
               

               
               1-383, gnl|dasNov1|scaffold_14098 (49024-48611)
               

               
               1-383, gnl|echTel1|scaffold_320646 (74457-74852)
               

               
               1-383, gnl|fr1|chrUn (40462064-40461696)
               

               
               1-383, gnl|galGal2|chr7 (23230409-23230020)
               

               
               1-383, gnl|hg17|chr2 (219332242-219332661)
               

               
               1-383, gnl|Hg17|chr2 (219332638-219332256)
               

               
               1-383, gnl|loxAfr1|scaffold_3459 (54880-54467)
               

               
               1-383, gnl|mm7|chr1 (74809334-74809745)
               

               
               1-383, gnl|Mm7|chr1 (74809722-74809352)
               

               
               1-383, gnl|monDom2|scaffold_39 (2001850-2001470)
               

               
               1-383, gnl|oryCun1|scaffold_203163 (55180-55582)
               

               
               1-383, gnl|panTro1|chr13 (109492097-109492516)
               

               
               1-383, gnl|rheMac2|chr12 (82491071-82491490)
               

               
               1-383, gnl|rn3|chr9 (74055658-74056065)
               

               
               1-383, gnl|tetNig1|chr2 (17065122-17064773)
               

               
               1-383, gnl|xenTro1|scaffold_31 (1708851-1709238)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-383, gnl|bosTau2|chr2 (59484712-59485091)
               

               
               1-383, gnl|canFam2|chr37 (28247376-28247792)
               

               
               1-383, gnl|danRer3|chrUn (99245095-99244724)
               

               
               1-383, gnl|dasNov1|scaffold_14098 (49024-48611)
               

               
               1-383, gnl|echTel1|scaffold_320646 (74457-74852)
               

               
               1-383, gnl|fr1|chrUn (40462064-40461696)
               

               
               1-383, gnl|galGal2|chr7 (23230409-23230020)
               

               
               1-383, gnl|hg17|chr2 (219332242-219332661)
               

               
               1-383, gnl|Hg17|chr2 (219332638-219332256)
               

               
               1-383, gnl|loxAfr1|scaffold_3459 (54880-54467)
               

               
               1-383, gnl|mm7|chr1 (74809334-74809745)
               

               
               1-383, gnl|Mm7|chr1 (74809722-74809352)
               

               
               1-383, gnl|monDom2|scaffold_39 (2001850-2001470)
               

               
               1-383, gnl|oryCun1|scaffold_203163 (55180-55582)
               

               
               1-383, gnl|panTro1|chr13 (109492097-109492516)
               

               
               1-383, gnl|rheMac2|chr12 (82491071-82491490)
               

               
               1-383, gnl|rn3|chr9 (74055658-74056065)
               

               
               1-383, gnl|tetNig1|chr2 (17065122-17064773)
               

               
               1-383, gnl|xenTro1|scaffold_31 (1708851-1709238)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.239292)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)

	1-383, gnl\|bosTau2\|chr2 (59484712-59485091)
	1-383, gnl\|canFam2\|chr37 (28247376-28247792)
	1-383, gnl\|danRer3\|chrUn (99245095-99244724)
	1-383, gnl\|dasNov1\|scaffold_14098 (49024-48611)
	1-383, gnl\|echTel1\|scaffold_320646 (74457-74852)
	1-383, gnl\|fr1\|chrUn (40462064-40461696)
	1-383, gnl\|galGal2\|chr7 (23230409-23230020)
	1-383, gnl\|hg17\|chr2 (219332242-219332661)
	1-383, gnl\|Hg17\|chr2 (219332638-219332256)
	1-383, gnl\|loxAfr1\|scaffold_3459 (54880-54467)
	1-383, gnl\|mm7\|chr1 (74809334-74809745)
	1-383, gnl\|Mm7\|chr1 (74809722-74809352)
	1-383, gnl\|monDom2\|scaffold_39 (2001850-2001470)
	1-383, gnl\|oryCun1\|scaffold_203163 (55180-55582)
	1-383, gnl\|panTro1\|chr13 (109492097-109492516)
	1-383, gnl\|rheMac2\|chr12 (82491071-82491490)
	1-383, gnl\|rn3\|chr9 (74055658-74056065)
	1-383, gnl\|tetNig1\|chr2 (17065122-17064773)
	1-383, gnl\|xenTro1\|scaffold_31 (1708851-1709238)