Ss1.1-rpigca0_011241.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAGCTCCGAGACGCGACGCGGGGCCGCGGGGAGCGAGCGGCCGCCTCAGTGTCCTTC CCCTCCCTACCCCTGGCCTCGCCGCCTTCTCCCCGCAGCCGGACCGGAACTATGTGATCC CGGAAGTTCCGGCGCCATTGCTGTGTGGGATAAACAGTAATGGCGGAGGCTGCAGCTCCC GGAACAACAGCCACAACACCCGGAGCAGGAGCGGCAGCAGCGGCGGTGGCAGCGGCCTCC CCCACCCCTATCCCCGCAGTCACCTCCCCGTCCCCGGGGGCGGGGGGCGGGGGAGGCGGC AGCGACAGCGGCGGCGGCGGCTGGACTAAACAGGTCACCTGCAGGTATTTCATGCATGGG GTTTGTAAGGAAGGAGATAACTGTCGCTATTCACATGACCTCTCTGACAGTCCATACGGT GTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTACGGAGACCGCTGCAGGTATGAA CATAGCAAGCCACTGAAACAGGAGGAAACAACTGCTACAGATCTAACTGCAGAGTCATCC CTTGCTGCTTCCTCAAGTCTCTCAGCAGTAGTTGGACCAATTGTTGAAATGAATATGGGT GAAGCGGAGTCAAGAAATTCAAACTTTGCAACTGTAGGAGCAGGTTCAGAAGACTGGGTG AACGCCATCGAGTTTGTTCCTGGGCAGCCCTACTGTGGCCGTACTGCTCCTTCCTGCACT GAAGCACCCCTGCAGAGCTCGGTGACCAAGCAAGAGTCCGAGAAAGAGCAAACTGCAGTG GAGACGAAGAAGCAACTCTGTCCCTATGCTGCGGTGGGGGAGTGCCGCTACGGGGAGAAC TGTGTGTATCTCCACGGAGACCCCTGTGACATGTGTGGGCTGCAGGTCCTCCATCCCGTG GACGCTGCCCAGAGATCACAGCACATCAAATCGTGCATCGAGGCCCACGAGAAGGACATG GAGCTCTCGTTTGCCGTGCAGCGCAGCAAGGACATGGTGTGTGGGATCTGCATGGAGGTG GTGTACGAGAAGGCCAACCCCAGCGAGCGCCGCTTCGGGATCCTCTCCAACTGCAACCAC ACCTACTGTCTCAAGTGTATTCGCAAGTGGAGGAGTGCTAAGCAGTTTGAGAGCAAGATC ATAAAGTCCTGCCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTGG GTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCAGAAATACAAGGAGGCAATGAGCAAC AAGGCGTGCAGGTCTAGTCGGGATTTCTTCTTTGTATTTCAGCTAGCTTCTAGATTAGTT GGTCTATCTACTTTTATTGGAATGAGGAAACCCTATGTATCAGTCAGTAGAATCTTCGTG CTTTTTCCAAGGAGATTGTGTTTAACGGATTAGCCAAGTTAGGCTCAGAGAACAAACTTA CCCAGCTCTGAATGTACGTACGTTTCCTGACATTTTCCATTTTCCACTTTTCCTATTCCA TCCATGAAGCTAGCCAATAATCCACCATCCTTAAAGATTGTTCTCATAACTGAACAAAAA GACTTGTTTCACGATGAGCTGGAAGACTTTTATGACTTGGATCTATAGCAGCCTTGCGCG GCGCGTGAACTGGTCTGCCGAGCCTCAGCAGCTGTCCCCTGCGGTGGGGTGGCAGTGCCC GTGGTTCTCTCCTAGGCAGGCCTCTCAACTCCAGGTGCTGTCGTAATAACTTTTACCCAG GGCCTGTCTTCTCAACCCCTCACCTTTCCCCAGGGAGTGTGTTTTCTCTGTTTAAAAAAA GTTACAAAAATAAATCTTCAAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAGCTCCGAGACGCGACGCGGGGCCGCGGGGAGCGAGCGGCCGCCTCAGTGTCCTTC CCCTCCCTACCCCTGGCCTCGCCGCCTTCTCCCCGCAGCCGGACCGGAACTATGTGATCC CGGAAGTTCCGGCGCCATTGCTGTGTGGGATAAACAGTAATGGCGGAGGCTGCAGCTCCC GGAACAACAGCCACAACACCCGGAGCAGGAGCGGCAGCAGCGGCGGTGGCAGCGGCCTCC CCCACCCCTATCCCCGCAGTCACCTCCCCGTCCCCGGGGGCGGGGGGCGGGGGAGGCGGC AGCGACAGCGGCGGCGGCGGCTGGACTAAACAGGTCACCTGCAGGTATTTCATGCATGGG GTTTGTAAGGAAGGAGATAACTGTCGCTATTCACATGACCTCTCTGACAGTCCATACGGT GTAGTGTGCAAGTATTTTCAGCGAGGGTACTGTATTTACGGAGACCGCTGCAGGTATGAA CATAGCAAGCCACTGAAACAGGAGGAAACAACTGCTACAGATCTAACTGCAGAGTCATCC CTTGCTGCTTCCTCAAGTCTCTCAGCAGTAGTTGGACCAATTGTTGAAATGAATATGGGT GAAGCGGAGTCAAGAAATTCAAACTTTGCAACTGTAGGAGCAGGTTCAGAAGACTGGGTG AACGCCATCGAGTTTGTTCCTGGGCAGCCCTACTGTGGCCGTACTGCTCCTTCCTGCACT GAAGCACCCCTGCAGAGCTCGGTGACCAAGCAAGAGTCCGAGAAAGAGCAAACTGCAGTG GAGACGAAGAAGCAACTCTGTCCCTATGCTGCGGTGGGGGAGTGCCGCTACGGGGAGAAC TGTGTGTATCTCCACGGAGACCCCTGTGACATGTGTGGGCTGCAGGTCCTCCATCCCGTG GACGCTGCCCAGAGATCACAGCACATCAAATCGTGCATCGAGGCCCACGAGAAGGACATG GAGCTCTCGTTTGCCGTGCAGCGCAGCAAGGACATGGTGTGTGGGATCTGCATGGAGGTG GTGTACGAGAAGGCCAACCCCAGCGAGCGCCGCTTCGGGATCCTCTCCAACTGCAACCAC ACCTACTGTCTCAAGTGTATTCGCAAGTGGAGGAGTGCTAAGCAGTTTGAGAGCAAGATC ATAAAGTCCTGCCCAGAATGCCGGATCACATCTAACTTTGTCATTCCAAGTGAGTACTGG GTGGAGGAGAAAGAAGAGAAGCAGAAACTCATTCAGAAATACAAGGAGGCAATGAGCAAC AAGGCGTGCAGGTCTAGTCGGGATTTCTTCTTTGTATTTCAGCTAGCTTCTAGATTAGTT GGTCTATCTACTTTTATTGGAATGAGGAAACCCTATGTATCAGTCAGTAGAATCTTCGTG CTTTTTCCAAGGAGATTGTGTTTAACGGATTAGCCAAGTTAGGCTCAGAGAACAAACTTA CCCAGCTCTGAATGTACGTACGTTTCCTGACATTTTCCATTTTCCACTTTTCCTATTCCA TCCATGAAGCTAGCCAATAATCCACCATCCTTAAAGATTGTTCTCATAACTGAACAAAAA GACTTGTTTCACGATGAGCTGGAAGACTTTTATGACTTGGATCTATAGCAGCCTTGCGCG GCGCGTGAACTGGTCTGCCGAGCCTCAGCAGCTGTCCCCTGCGGTGGGGTGGCAGTGCCC GTGGTTCTCTCCTAGGCAGGCCTCTCAACTCCAGGTGCTGTCGTAATAACTTTTACCCAG GGCCTGTCTTCTCAACCCCTCACCTTTCCCCAGGGAGTGTGTTTTCTCTGTTTAAAAAAA GTTACAAAAATAAATCTTCAAGTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 472-701, gnl|bosTau2|chr4 (57514639-57514413) | |
| 472-701, gnl|Hg17|chr7 (139612922-139612693) | |
| 472-701, gnl|Mm7|chr6 (39335943-39335714) | |
| 926-1147, gnl|bosTau2|chr4 (57511819-57511598) | |
| 926-1147, gnl|canFam2|chr16 (11490636-11490418) | |
| 926-1147, gnl|danRer3|chrNA (184614265-184614483) | |
| 926-1147, gnl|dasNov1|scaffold_14387 (55770-55984) | |
| 926-1147, gnl|echTel1|scaffold_64318 (852-1068) | |
| 926-1147, gnl|galGal2|chr1 (53471537-53471755) | |
| 926-1147, gnl|hg17|chr7 (139609635-139609853) | |
| 926-1147, gnl|Hg17|chr7 (139609855-139609634) | |
| 926-1147, gnl|loxAfr1|scaffold_5135 (98030-98248) | |
| 926-1147, gnl|mm7|chr6 (39331190-39331408) | |
| 926-1147, gnl|Mm7|chr6 (39331410-39331189) | |
| 926-1147, gnl|monDom2|scaffold_22 (1684923-1684705) | |
| 926-1147, gnl|oryCun1|scaffold_119681 (5637-5419) | |
| 926-1147, gnl|panTro1|chr6 (142350209-142350427) | |
| 926-1147, gnl|rheMac2|chr3 (177947420-177947638) | |
| 926-1147, gnl|rn3|chr4 (67188377-67188595) | |
| 926-1147, gnl|tetNig1|chrUn_random (48278165-48278383) | |
| 926-1147, gnl|xenTro1|scaffold_835 (217737-217519) | |
| 1273-1560, gnl|bosTau2|chr4 (57511472-57511186) | |
| 1273-1560, gnl|canFam2|chr16 (11491101-11490637) | |
| 1273-1560, gnl|dasNov1|scaffold_120167 (4592-4122) | |
| 1273-1560, gnl|echTel1|scaffold_163115 (5014-4592) | |
| 1273-1560, gnl|galGal2|chr1 (53471064-53471536) | |
| 1273-1560, gnl|hg17|chr7 (139609168-139609634) | |
| 1273-1560, gnl|Hg17|chr7 (139609511-139609229) | |
| 1273-1560, gnl|loxAfr1|scaffold_5135 (97561-98029) | |
| 1273-1560, gnl|mm7|chr6 (39330736-39331189) | |
| 1273-1560, gnl|Mm7|chr6 (39331067-39330794) | |
| 1273-1560, gnl|monDom2|scaffold_22 (1685369-1684924) | |
| 1273-1560, gnl|oryCun1|scaffold_119681 (6087-5638) | |
| 1273-1560, gnl|panTro1|chr6 (142349742-142350208) | |
| 1273-1560, gnl|rheMac2|chr3 (177946945-177947419) | |
| 1273-1560, gnl|rn3|chr4 (67187922-67188376) | |
| 1633-1824, gnl|bosTau2|chr23 (21537122-21536928) | |
| 1633-1824, gnl|Hg17|chr7 (139607476-139607281) | |
| 1633-1824, gnl|Mm7|chr6 (39329181-39328997) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 472-701, gnl|bosTau2|chr4 (57514639-57514413) | |
| 472-701, gnl|Hg17|chr7 (139612922-139612693) | |
| 472-701, gnl|Mm7|chr6 (39335943-39335714) | |
| 926-1147, gnl|bosTau2|chr4 (57511819-57511598) | |
| 926-1147, gnl|canFam2|chr16 (11490636-11490418) | |
| 926-1147, gnl|danRer3|chrNA (184614265-184614483) | |
| 926-1147, gnl|dasNov1|scaffold_14387 (55770-55984) | |
| 926-1147, gnl|echTel1|scaffold_64318 (852-1068) | |
| 926-1147, gnl|galGal2|chr1 (53471537-53471755) | |
| 926-1147, gnl|hg17|chr7 (139609635-139609853) | |
| 926-1147, gnl|Hg17|chr7 (139609855-139609634) | |
| 926-1147, gnl|loxAfr1|scaffold_5135 (98030-98248) | |
| 926-1147, gnl|mm7|chr6 (39331190-39331408) | |
| 926-1147, gnl|Mm7|chr6 (39331410-39331189) | |
| 926-1147, gnl|monDom2|scaffold_22 (1684923-1684705) | |
| 926-1147, gnl|oryCun1|scaffold_119681 (5637-5419) | |
| 926-1147, gnl|panTro1|chr6 (142350209-142350427) | |
| 926-1147, gnl|rheMac2|chr3 (177947420-177947638) | |
| 926-1147, gnl|rn3|chr4 (67188377-67188595) | |
| 926-1147, gnl|tetNig1|chrUn_random (48278165-48278383) | |
| 926-1147, gnl|xenTro1|scaffold_835 (217737-217519) | |
| 1273-1560, gnl|bosTau2|chr4 (57511472-57511186) | |
| 1273-1560, gnl|canFam2|chr16 (11491101-11490637) | |
| 1273-1560, gnl|dasNov1|scaffold_120167 (4592-4122) | |
| 1273-1560, gnl|echTel1|scaffold_163115 (5014-4592) | |
| 1273-1560, gnl|galGal2|chr1 (53471064-53471536) | |
| 1273-1560, gnl|hg17|chr7 (139609168-139609634) | |
| 1273-1560, gnl|Hg17|chr7 (139609511-139609229) | |
| 1273-1560, gnl|loxAfr1|scaffold_5135 (97561-98029) | |
| 1273-1560, gnl|mm7|chr6 (39330736-39331189) | |
| 1273-1560, gnl|Mm7|chr6 (39331067-39330794) | |
| 1273-1560, gnl|monDom2|scaffold_22 (1685369-1684924) | |
| 1273-1560, gnl|oryCun1|scaffold_119681 (6087-5638) | |
| 1273-1560, gnl|panTro1|chr6 (142349742-142350208) | |
| 1273-1560, gnl|rheMac2|chr3 (177946945-177947419) | |
| 1273-1560, gnl|rn3|chr4 (67187922-67188376) | |
| 1633-1824, gnl|bosTau2|chr23 (21537122-21536928) | |
| 1633-1824, gnl|Hg17|chr7 (139607476-139607281) | |
| 1633-1824, gnl|Mm7|chr6 (39329181-39328997) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| clu (11.6056) | |
| tes (0.623441) | |
| hea (0.408998) | |
| lin (0.291206) | |
| ret (0.257467) | |
| pan (0.23596) | |
| gul (0.177588) | |
| rec (0.17307) | |
| csp (0.161186) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| sug (0.127291) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (11.6056) | |
| tes (0.623441) | |
| hea (0.408998) | |
| lin (0.291206) | |
| ret (0.257467) | |
| pan (0.23596) | |
| gul (0.177588) | |
| rec (0.17307) | |
| csp (0.161186) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| sug (0.127291) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |