Non-Coding RNA Search

Ss1.1-rpigca0_011311.5

Sequence:


               
               GCTGGTGTGAGTAGCTTGGCTGGAGAGGCTTACCCCAGAAGGAGGGAGGCAGCGGACTTA
CTGGGCCGACGGACTCCTACACAGTTCCTGAGCTGGTGCCAGGCAGGTAACACTGTCTTC
CTGCAGCCCCCAGCATGTGGGCAGGCCTGGGCCCCACCGTCACACTGGCTCTGGTGTTGG
CGGTGGCATGGGCCACGGAGCTCAAGCCCACAGCACCACCTATCTTCACCGGCCGGCCCT
TTGTGGTAGCATGGGACGTGCCCACACAAGACTGTGGCCCACGCCACAAGGTGCCACTGG
ACCCAAAGGACATGAAGGCTTTCGATGTGCAGGCCTCACCTAATGAGGGTTTCGTGAACC
AGAATATCACCATCTTTTACCGTGACCGGCTGGGCATGTATCCACACTTTGATTCAGTGG
GGAGGTCTGTGCATGGCGGCGTGCCACAGAATGGCAGTCTCTGGGTACATCTGAAGATGC
TCAAGGGACATGTGGAACACTACATTCGTACACAGGAACCTGCAGGGCTGGCAGTCATTG
ACTGGGAGGACTGGCGGCCAGTGTGGGTGCGCAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGTGTGAGTAGCTTGGCTGGAGAGGCTTACCCCAGAAGGAGGGAGGCAGCGGACTTA
CTGGGCCGACGGACTCCTACACAGTTCCTGAGCTGGTGCCAGGCAGGTAACACTGTCTTC
CTGCAGCCCCCAGCATGTGGGCAGGCCTGGGCCCCACCGTCACACTGGCTCTGGTGTTGG
CGGTGGCATGGGCCACGGAGCTCAAGCCCACAGCACCACCTATCTTCACCGGCCGGCCCT
TTGTGGTAGCATGGGACGTGCCCACACAAGACTGTGGCCCACGCCACAAGGTGCCACTGG
ACCCAAAGGACATGAAGGCTTTCGATGTGCAGGCCTCACCTAATGAGGGTTTCGTGAACC
AGAATATCACCATCTTTTACCGTGACCGGCTGGGCATGTATCCACACTTTGATTCAGTGG
GGAGGTCTGTGCATGGCGGCGTGCCACAGAATGGCAGTCTCTGGGTACATCTGAAGATGC
TCAAGGGACATGTGGAACACTACATTCGTACACAGGAACCTGCAGGGCTGGCAGTCATTG
ACTGGGAGGACTGGCGGCCAGTGTGGGTGCGCAACT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               82-576, gnl|bosTau2|chr22 (38574475-38573981)
               

               
               82-576, gnl|Hg17|chr3 (50332973-50332492)
               

               
               82-576, gnl|Mm7|chr9 (107299549-107300030)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-576, gnl|bosTau2|chr22 (38574475-38573981)
               

               
               82-576, gnl|Hg17|chr3 (50332973-50332492)
               

               
               82-576, gnl|Mm7|chr9 (107299549-107300030)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               clu (0.598229)
               

               
               cty (0.31224)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.598229)
               

               
               cty (0.31224)
               

               
               eje (0.0988338)

	82-576, gnl\|bosTau2\|chr22 (38574475-38573981)
	82-576, gnl\|Hg17\|chr3 (50332973-50332492)
	82-576, gnl\|Mm7\|chr9 (107299549-107300030)