Non-Coding RNA Search

Ss1.1-rpigca0_011361.5

Sequence:


               
               GGGAAAAGCTGCTAAGGCGGGCGCCATGCTGCGGTGGCCTTTGGCCCTCACCTTCTTGTT
GCTGGCAGTTTCCGGCCTCGAGTGCGATGTGAAAGAAGTTTGTCTTGCAAGCCCTGGCAT
CCCGGGCACTCCTGGATCCCATGGGCTTCCAGGAAGGGATGGGAGAGATGGAATCAAAGG
AGACCCTGGACCTCCAGGCCCCATGGCCCCCCCTGGAGGGATGGCAGGCCCCCCTGGACA
AGATGGGATGATTGGAGCTCCTGGACTCCCTGGGGAGCGTGGAGAAAAGGGAGAACCTGG
TGAGAGGGGCCCTCCAGGGCTTCCGGCTCATCTAGATGAGGAGCTCCAGAGCGCACTCCA
TGAGATCAGACATCAAATCCTGCAGTCCATGGGTGTCCTCAGTTTCCAGGAGTTCATGCT
GGCAGTGGGAGAGAAGGTCTTCTCCACCAATGGGCAGTCAGTCGCTTTTGATGTCACTAG
AGAGTTGTGTGCCAGAGCAGGTGGACGCATCGCTGCCCCAATGAGTCCAGAGGAGAATGA
GGCCATTGCAAGCATTGTGAAGAAACACAACACTTATGCTTACCTCGGCCTGGTTGAGGG
CCCCACTGCTGGAGACTTCTACTACTTGGATGGAACCCCTGTGAATTACACCAACTGGTA
CCCAGGGGAACCCAGGGGTCGGGGCAAAGAGAAGTGTGTGGAGATGTACACAGATGGCCA
GTGGAATGACAGGAACTGCCAGCAGTACCGACTGGCCATATGCGAGTTTTGAGCAGGTGC
CAGGCCACAGGATGGATAGGGTCCTGCCTTGCCTTTCAGCCTCCATCCTGGGGATCTCTT
TGGTCTATGAGATGCTGGAACTCCTTTGTGGCTATCAGAGTTGGAGGCATTCTTGGCCAC
TTCACTCCCAGCTGGGCCCTGACTCCTCCCCCATGATCACTAATCAGTCTGACTCCTCTG
GAACCCTTTCCTTCCACTGCACTCTAAGCAGCCACTCTAACGTTGCCCTTTCTTCCTGTT
CTTGTCCAAGTCCTTCATTTATAGATGGCAACAGTGAAGTCCTGGGATGGAAGTTTCTTC
ATAAATCACACAGAGGGTGCCTGCTTCCTGGCTCCCTCTACTCTTTCTCTGCAGCCCACT
GCCTGCCCAGCGTTAAAGAGATTTGGCAGTTCTGGCCAAGCATAGTGATAGTCAGATAGG
CTTCTGGGACATGCCAGATGTGTGGGGCTGAGGGTACATTTGGGATCATCTGGCAGCCTG
AGGTCTGTGGGGGCACATCTGTGCGGGCTCTTCATGAGGTCAGAGGTCCAGGTCATGCCT
GAGCATGGTAGAGGCCACCCCACCCCTAGTGATTAGCATGTATTATCCACTTCCTTGAGT
CTTGGGGTGCCAGCTCAACTCCCTGAACTAAAAGCAGCCAGCCTACCTCTAGGGAAGATC
TTACCCCCAACCTTGGCCATTACCCCAGTGACTTCATGACTCCCCACCACTTTGGACTTT
CAGGGAAGTGTTCACAGCATTCACCACATCATTATCTACTAAACACATACTATATATCGA
GCACCTTGACAAGCACTTTTAAGACATCTTATAAAATATTACTGAATCTTCACACAGTAC
CAATGGATGAGCATTATTTTCCCCATTTTTTTATATGGGGATACTGAACTTAGAAAAAAA
AGTTAAATGTTTTGAGTTTTATTATATGCAGCAAGTGGCAGAGGCTGGTTTCAAACCCAT
CCACCTGGACTCAAAGCTTATGCTCGTAACCACCCCACCCTCTCACTGAATGGAGATGAT
TCAAGTGTAATAAATCATGCATGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAAAGCTGCTAAGGCGGGCGCCATGCTGCGGTGGCCTTTGGCCCTCACCTTCTTGTT
GCTGGCAGTTTCCGGCCTCGAGTGCGATGTGAAAGAAGTTTGTCTTGCAAGCCCTGGCAT
CCCGGGCACTCCTGGATCCCATGGGCTTCCAGGAAGGGATGGGAGAGATGGAATCAAAGG
AGACCCTGGACCTCCAGGCCCCATGGCCCCCCCTGGAGGGATGGCAGGCCCCCCTGGACA
AGATGGGATGATTGGAGCTCCTGGACTCCCTGGGGAGCGTGGAGAAAAGGGAGAACCTGG
TGAGAGGGGCCCTCCAGGGCTTCCGGCTCATCTAGATGAGGAGCTCCAGAGCGCACTCCA
TGAGATCAGACATCAAATCCTGCAGTCCATGGGTGTCCTCAGTTTCCAGGAGTTCATGCT
GGCAGTGGGAGAGAAGGTCTTCTCCACCAATGGGCAGTCAGTCGCTTTTGATGTCACTAG
AGAGTTGTGTGCCAGAGCAGGTGGACGCATCGCTGCCCCAATGAGTCCAGAGGAGAATGA
GGCCATTGCAAGCATTGTGAAGAAACACAACACTTATGCTTACCTCGGCCTGGTTGAGGG
CCCCACTGCTGGAGACTTCTACTACTTGGATGGAACCCCTGTGAATTACACCAACTGGTA
CCCAGGGGAACCCAGGGGTCGGGGCAAAGAGAAGTGTGTGGAGATGTACACAGATGGCCA
GTGGAATGACAGGAACTGCCAGCAGTACCGACTGGCCATATGCGAGTTTTGAGCAGGTGC
CAGGCCACAGGATGGATAGGGTCCTGCCTTGCCTTTCAGCCTCCATCCTGGGGATCTCTT
TGGTCTATGAGATGCTGGAACTCCTTTGTGGCTATCAGAGTTGGAGGCATTCTTGGCCAC
TTCACTCCCAGCTGGGCCCTGACTCCTCCCCCATGATCACTAATCAGTCTGACTCCTCTG
GAACCCTTTCCTTCCACTGCACTCTAAGCAGCCACTCTAACGTTGCCCTTTCTTCCTGTT
CTTGTCCAAGTCCTTCATTTATAGATGGCAACAGTGAAGTCCTGGGATGGAAGTTTCTTC
ATAAATCACACAGAGGGTGCCTGCTTCCTGGCTCCCTCTACTCTTTCTCTGCAGCCCACT
GCCTGCCCAGCGTTAAAGAGATTTGGCAGTTCTGGCCAAGCATAGTGATAGTCAGATAGG
CTTCTGGGACATGCCAGATGTGTGGGGCTGAGGGTACATTTGGGATCATCTGGCAGCCTG
AGGTCTGTGGGGGCACATCTGTGCGGGCTCTTCATGAGGTCAGAGGTCCAGGTCATGCCT
GAGCATGGTAGAGGCCACCCCACCCCTAGTGATTAGCATGTATTATCCACTTCCTTGAGT
CTTGGGGTGCCAGCTCAACTCCCTGAACTAAAAGCAGCCAGCCTACCTCTAGGGAAGATC
TTACCCCCAACCTTGGCCATTACCCCAGTGACTTCATGACTCCCCACCACTTTGGACTTT
CAGGGAAGTGTTCACAGCATTCACCACATCATTATCTACTAAACACATACTATATATCGA
GCACCTTGACAAGCACTTTTAAGACATCTTATAAAATATTACTGAATCTTCACACAGTAC
CAATGGATGAGCATTATTTTCCCCATTTTTTTATATGGGGATACTGAACTTAGAAAAAAA
AGTTAAATGTTTTGAGTTTTATTATATGCAGCAAGTGGCAGAGGCTGGTTTCAAACCCAT
CCACCTGGACTCAAAGCTTATGCTCGTAACCACCCCACCCTCTCACTGAATGGAGATGAT
TCAAGTGTAATAAATCATGCATGTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9N1X3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9N1X3_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-198, - strand, RNAz p=0.788773
               

               
               674-792, + strand, RNAz p=0.76862

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-198, - strand, RNAz p=0.788773
               

               
               674-792, + strand, RNAz p=0.76862

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005411, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005411, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-198, gnl|bosTau2|chr28 (27998134-27998330)
               

               
               2-198, gnl|Hg17|chr10 (81361510-81361706)
               

               
               2-198, gnl|Mm7|chr14 (38558899-38559095)
               


               
               395-1010, gnl|bosTau2|chr28 (27999958-28000578)
               

               
               395-1010, gnl|Hg17|chr10 (81363444-81364078)
               

               
               395-1010, gnl|Mm7|chr14 (38560534-38561167)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-198, gnl|bosTau2|chr28 (27998134-27998330)
               

               
               2-198, gnl|Hg17|chr10 (81361510-81361706)
               

               
               2-198, gnl|Mm7|chr14 (38558899-38559095)
               


               
               395-1010, gnl|bosTau2|chr28 (27999958-28000578)
               

               
               395-1010, gnl|Hg17|chr10 (81363444-81364078)
               

               
               395-1010, gnl|Mm7|chr14 (38560534-38561167)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               clu (8.13592)
               

               
               nlu (1.72513)
               

               
               liv (0.438853)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (8.13592)
               

               
               nlu (1.72513)
               

               
               liv (0.438853)

	79-198, - strand, RNAz p=0.788773
	674-792, + strand, RNAz p=0.76862

	2-198, gnl\|bosTau2\|chr28 (27998134-27998330)
	2-198, gnl\|Hg17\|chr10 (81361510-81361706)
	2-198, gnl\|Mm7\|chr14 (38558899-38559095)

	395-1010, gnl\|bosTau2\|chr28 (27999958-28000578)
	395-1010, gnl\|Hg17\|chr10 (81363444-81364078)
	395-1010, gnl\|Mm7\|chr14 (38560534-38561167)