Non-Coding RNA Search

Ss1.1-rpigca0_011367.5

Sequence:


               
               ACCCTGATATCCTGGTAAGTTGTAAATAACATGGAAGAATATGCTCTGGGCTTCCTTTGC
TGAGATGTCTTTTAAGGAGTTAATTTTGTGTTTCAGCCATACCCATCAACTTTATATTTT
TAAGGGCGTGCAACATGGAAGAAGGAAAAGAAGTCACACAAAAACTCCTTCTGTCCATAA
CTGAGCCCCACCCAGCAAAGTACAAACAGGATGCAAATGCAGTGGCACAGAAGTCAGTTA
TCTTGTTTCACATTCTACTTCTGGGCTGGGGTACATGCCCTGTGAGAGAGACATTGGTGT
GAATGTGACCATACAATGGCATACAGATTGTTGTACAAGACTTACTTGCAGTACTGTGTT
CTTCAGCTAGAGGCAGCTTAAAAAAAAAATGCAGTTGTTTATTAATTAGCACTAAAATTA
ACATCTCAGTAATCAGTATTAGGACTTCTGAGGACCATTATGGGTCAATCCTGAGAATAG
AAATCAGTGCCTTGCTAGCAAGAGTTCACTGGCTGTTATCAACAAGCATTCAAGATTATT
TCTGCTAAGAGTAGTGTTAGTAACCTGGCTTTGCTTTCCTCTGACAATCGCAGGGTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCTGATATCCTGGTAAGTTGTAAATAACATGGAAGAATATGCTCTGGGCTTCCTTTGC
TGAGATGTCTTTTAAGGAGTTAATTTTGTGTTTCAGCCATACCCATCAACTTTATATTTT
TAAGGGCGTGCAACATGGAAGAAGGAAAAGAAGTCACACAAAAACTCCTTCTGTCCATAA
CTGAGCCCCACCCAGCAAAGTACAAACAGGATGCAAATGCAGTGGCACAGAAGTCAGTTA
TCTTGTTTCACATTCTACTTCTGGGCTGGGGTACATGCCCTGTGAGAGAGACATTGGTGT
GAATGTGACCATACAATGGCATACAGATTGTTGTACAAGACTTACTTGCAGTACTGTGTT
CTTCAGCTAGAGGCAGCTTAAAAAAAAAATGCAGTTGTTTATTAATTAGCACTAAAATTA
ACATCTCAGTAATCAGTATTAGGACTTCTGAGGACCATTATGGGTCAATCCTGAGAATAG
AAATCAGTGCCTTGCTAGCAAGAGTTCACTGGCTGTTATCAACAAGCATTCAAGATTATT
TCTGCTAAGAGTAGTGTTAGTAACCTGGCTTTGCTTTCCTCTGACAATCGCAGGGTTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               379-484, - strand, RNAz p=0.652219

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               379-484, - strand, RNAz p=0.652219

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-600, gnl|bosTau2|chr2 (9490520-9491106)
               

               
               1-600, gnl|canFam2|chr19 (56673940-56674803)
               

               
               1-600, gnl|dasNov1|scaffold_7924 (12742-13595)
               

               
               1-600, gnl|echTel1|scaffold_318506 (102627-101802)
               

               
               1-600, gnl|galGal2|chr7 (36202436-36203270)
               

               
               1-600, gnl|hg17|chr2 (153330211-153331067)
               

               
               1-600, gnl|Hg17|chr2 (153330257-153330824)
               

               
               1-600, gnl|loxAfr1|scaffold_1672 (24403-23545)
               

               
               1-600, gnl|mm7|chr2 (53139510-53140349)
               

               
               1-600, gnl|Mm7|chr2 (53139555-53140121)
               

               
               1-600, gnl|monDom2|scaffold_2 (43916119-43917090)
               

               
               1-600, gnl|oryCun1|scaffold_205537 (12713-11824)
               

               
               1-600, gnl|panTro1|chr13 (42396314-42397171)
               

               
               1-600, gnl|rheMac2|chr12 (16298678-16299539)
               

               
               1-600, gnl|rn3|chr3 (34551729-34552562)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr2 (9490520-9491106)
               

               
               1-600, gnl|canFam2|chr19 (56673940-56674803)
               

               
               1-600, gnl|dasNov1|scaffold_7924 (12742-13595)
               

               
               1-600, gnl|echTel1|scaffold_318506 (102627-101802)
               

               
               1-600, gnl|galGal2|chr7 (36202436-36203270)
               

               
               1-600, gnl|hg17|chr2 (153330211-153331067)
               

               
               1-600, gnl|Hg17|chr2 (153330257-153330824)
               

               
               1-600, gnl|loxAfr1|scaffold_1672 (24403-23545)
               

               
               1-600, gnl|mm7|chr2 (53139510-53140349)
               

               
               1-600, gnl|Mm7|chr2 (53139555-53140121)
               

               
               1-600, gnl|monDom2|scaffold_2 (43916119-43917090)
               

               
               1-600, gnl|oryCun1|scaffold_205537 (12713-11824)
               

               
               1-600, gnl|panTro1|chr13 (42396314-42397171)
               

               
               1-600, gnl|rheMac2|chr12 (16298678-16299539)
               

               
               1-600, gnl|rn3|chr3 (34551729-34552562)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)
               

               
               cty (0.10408)

	1-600, gnl\|bosTau2\|chr2 (9490520-9491106)
	1-600, gnl\|canFam2\|chr19 (56673940-56674803)
	1-600, gnl\|dasNov1\|scaffold_7924 (12742-13595)
	1-600, gnl\|echTel1\|scaffold_318506 (102627-101802)
	1-600, gnl\|galGal2\|chr7 (36202436-36203270)
	1-600, gnl\|hg17\|chr2 (153330211-153331067)
	1-600, gnl\|Hg17\|chr2 (153330257-153330824)
	1-600, gnl\|loxAfr1\|scaffold_1672 (24403-23545)
	1-600, gnl\|mm7\|chr2 (53139510-53140349)
	1-600, gnl\|Mm7\|chr2 (53139555-53140121)
	1-600, gnl\|monDom2\|scaffold_2 (43916119-43917090)
	1-600, gnl\|oryCun1\|scaffold_205537 (12713-11824)
	1-600, gnl\|panTro1\|chr13 (42396314-42397171)
	1-600, gnl\|rheMac2\|chr12 (16298678-16299539)
	1-600, gnl\|rn3\|chr3 (34551729-34552562)