Non-Coding RNA Search

Ss1.1-rpigca0_012546.5

Sequence:


               
               CGCTTGGCTGCGGGTGTGCCCAACACACCCACCCGCCTGGTGTTCTCGGCCCTGGGACCC
ACATCTCTGAAAGTGAGCTGGCAGGAGCCACAGTGTGAGCGGGCACTGCAGGGCTACAGC
GTGGAGTACCAGCTGCTGAATGGCGGTGAGCTGCATCGGCTCAACATCCCCAACCCCAGC
CAGACATCAGTGGTGGTAGAAGATCTTCTGCCCAACCACTCCTACGTGTTCCGCGTGCGG
GCCCAGAGCCAGGAAGGCTGGGGCCCAGAGCGCGAGGGCGTCATCACCATCGAGTCGCAG
GTGCACCCACAGAGCCCACTCCTTCCCCTGCCGGGCTCTGCCTTCACTTTGAGCACACCC
AGTGCCCCAGGCCCACTGGTGTTCACCGCCCTGAGCCCAGATTCTCTGCAGCTGAGCTGG
GAGCGGCCGCGCAGGCCGGACGGGGACATCCTCGGCTACCTGGTGACGTGTGAGATGGCG
CACGGAGGAGAGCCAGCCACCACGTTCCTGGTGGACGGCGACAGCCCTGAGAGCCGGCTG
ACCGTGCCGGGCCTCAGCGAGAACGTGCCCTACAAGTTCAAGGTGCAGGCCAAGACCACC
CAAGGCTTCGGGCCAGAGCGCGAGGGTATCATCACCATCGAGTCCCAGGACGGAGGCCCC
TTCCCACAGCTGGGCAGCCACTCGGGGCTCTTCCAGCTCCCAGTGTCGGGCGAGTACAGC
AGCATCACCACCACCCACACCAGCACCGCCGAGCCCTTCCTGCTGGATGGACTGACCCTA
GGGTCCCAGCGCCTGGAAGCGAGTGGCTCCCTCACCCGGCACGTGACACAAGAGTTTGTG
AGCCGGACGCTGACCAGCACTGGCACCCTCAGCAGCCAGGTGGACCAACAGTTCTTCCAG
AGCTGAGCCCGCCGCCGCCGCCACCCCCCGCCGCCGCCCCACCCCCTCGCTCCCCGGCGC
TGCCTCAGCTACATCTTCGGACCCCTGGTGACCCAGCCCACCGCCTGCTGATCACGGGAC
CCCTGCCTCTGGCCGCACACCAGGGGCTAAGTGTCCTCTGCGAGGCATGAAGGGGGCCGA
GGTCCCGGCAGGCCCTGCTGGCTGCCCTCCTGCTCTCAGGCCCCAGACCCTTTGTAACCA
AAGAGCTGGGACCAGCATGACAAGGCCCCAGCTTTGTTCTGCACTTAATAAAAAGATTGA
GCTACAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTTGGCTGCGGGTGTGCCCAACACACCCACCCGCCTGGTGTTCTCGGCCCTGGGACCC
ACATCTCTGAAAGTGAGCTGGCAGGAGCCACAGTGTGAGCGGGCACTGCAGGGCTACAGC
GTGGAGTACCAGCTGCTGAATGGCGGTGAGCTGCATCGGCTCAACATCCCCAACCCCAGC
CAGACATCAGTGGTGGTAGAAGATCTTCTGCCCAACCACTCCTACGTGTTCCGCGTGCGG
GCCCAGAGCCAGGAAGGCTGGGGCCCAGAGCGCGAGGGCGTCATCACCATCGAGTCGCAG
GTGCACCCACAGAGCCCACTCCTTCCCCTGCCGGGCTCTGCCTTCACTTTGAGCACACCC
AGTGCCCCAGGCCCACTGGTGTTCACCGCCCTGAGCCCAGATTCTCTGCAGCTGAGCTGG
GAGCGGCCGCGCAGGCCGGACGGGGACATCCTCGGCTACCTGGTGACGTGTGAGATGGCG
CACGGAGGAGAGCCAGCCACCACGTTCCTGGTGGACGGCGACAGCCCTGAGAGCCGGCTG
ACCGTGCCGGGCCTCAGCGAGAACGTGCCCTACAAGTTCAAGGTGCAGGCCAAGACCACC
CAAGGCTTCGGGCCAGAGCGCGAGGGTATCATCACCATCGAGTCCCAGGACGGAGGCCCC
TTCCCACAGCTGGGCAGCCACTCGGGGCTCTTCCAGCTCCCAGTGTCGGGCGAGTACAGC
AGCATCACCACCACCCACACCAGCACCGCCGAGCCCTTCCTGCTGGATGGACTGACCCTA
GGGTCCCAGCGCCTGGAAGCGAGTGGCTCCCTCACCCGGCACGTGACACAAGAGTTTGTG
AGCCGGACGCTGACCAGCACTGGCACCCTCAGCAGCCAGGTGGACCAACAGTTCTTCCAG
AGCTGAGCCCGCCGCCGCCGCCACCCCCCGCCGCCGCCCCACCCCCTCGCTCCCCGGCGC
TGCCTCAGCTACATCTTCGGACCCCTGGTGACCCAGCCCACCGCCTGCTGATCACGGGAC
CCCTGCCTCTGGCCGCACACCAGGGGCTAAGTGTCCTCTGCGAGGCATGAAGGGGGCCGA
GGTCCCGGCAGGCCCTGCTGGCTGCCCTCCTGCTCTCAGGCCCCAGACCCTTTGTAACCA
AAGAGCTGGGACCAGCATGACAAGGCCCCAGCTTTGTTCTGCACTTAATAAAAAGATTGA
GCTACAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q66JU8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q66JU8_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               32-150, + strand, RNAz p=0.600128

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-150, + strand, RNAz p=0.600128

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               16-121, - strand, RNAmicro p=0.971231

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               16-121, - strand, RNAmicro p=0.971231

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-150, gnl|bosTau2|chr19 (47353753-47353604)
               

               
               1-150, gnl|canFam2|chr9 (7824966-7824864)
               

               
               1-150, gnl|echTel1|scaffold_308113 (7876-7978)
               

               
               1-150, gnl|fr1|chrUn (234159543-234159644)
               

               
               1-150, gnl|galGal2|chr18 (4526613-4526511)
               

               
               1-150, gnl|hg17|chr17 (71263375-71263477)
               

               
               1-150, gnl|Hg17|chr17 (71263382-71263531)
               

               
               1-150, gnl|loxAfr1|scaffold_121585 (4379-4277)
               

               
               1-150, gnl|mm7|chr11 (116115504-116115606)
               

               
               1-150, gnl|Mm7|chr11 (116115511-116115660)
               

               
               1-150, gnl|monDom2|scaffold_18 (33495208-33495310)
               

               
               1-150, gnl|oryCun1|scaffold_188883 (471-573)
               

               
               1-150, gnl|panTro1|chr19 (74620256-74620358)
               

               
               1-150, gnl|rheMac2|chr16 (71068506-71068608)
               

               
               1-150, gnl|rn3|chr10 (106129138-106129240)
               

               
               1-150, gnl|tetNig1|chrUn_random (23070712-23070814)
               

               
               1-150, gnl|xenTro1|scaffold_632 (542290-542392)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-150, gnl|bosTau2|chr19 (47353753-47353604)
               

               
               1-150, gnl|canFam2|chr9 (7824966-7824864)
               

               
               1-150, gnl|echTel1|scaffold_308113 (7876-7978)
               

               
               1-150, gnl|fr1|chrUn (234159543-234159644)
               

               
               1-150, gnl|galGal2|chr18 (4526613-4526511)
               

               
               1-150, gnl|hg17|chr17 (71263375-71263477)
               

               
               1-150, gnl|Hg17|chr17 (71263382-71263531)
               

               
               1-150, gnl|loxAfr1|scaffold_121585 (4379-4277)
               

               
               1-150, gnl|mm7|chr11 (116115504-116115606)
               

               
               1-150, gnl|Mm7|chr11 (116115511-116115660)
               

               
               1-150, gnl|monDom2|scaffold_18 (33495208-33495310)
               

               
               1-150, gnl|oryCun1|scaffold_188883 (471-573)
               

               
               1-150, gnl|panTro1|chr19 (74620256-74620358)
               

               
               1-150, gnl|rheMac2|chr16 (71068506-71068608)
               

               
               1-150, gnl|rn3|chr10 (106129138-106129240)
               

               
               1-150, gnl|tetNig1|chrUn_random (23070712-23070814)
               

               
               1-150, gnl|xenTro1|scaffold_632 (542290-542392)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               clu (0.358938)
               

               
               pla (0.267344)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)
               

               
               pla (0.267344)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

	1-150, gnl\|bosTau2\|chr19 (47353753-47353604)
	1-150, gnl\|canFam2\|chr9 (7824966-7824864)
	1-150, gnl\|echTel1\|scaffold_308113 (7876-7978)
	1-150, gnl\|fr1\|chrUn (234159543-234159644)
	1-150, gnl\|galGal2\|chr18 (4526613-4526511)
	1-150, gnl\|hg17\|chr17 (71263375-71263477)
	1-150, gnl\|Hg17\|chr17 (71263382-71263531)
	1-150, gnl\|loxAfr1\|scaffold_121585 (4379-4277)
	1-150, gnl\|mm7\|chr11 (116115504-116115606)
	1-150, gnl\|Mm7\|chr11 (116115511-116115660)
	1-150, gnl\|monDom2\|scaffold_18 (33495208-33495310)
	1-150, gnl\|oryCun1\|scaffold_188883 (471-573)
	1-150, gnl\|panTro1\|chr19 (74620256-74620358)
	1-150, gnl\|rheMac2\|chr16 (71068506-71068608)
	1-150, gnl\|rn3\|chr10 (106129138-106129240)
	1-150, gnl\|tetNig1\|chrUn_random (23070712-23070814)
	1-150, gnl\|xenTro1\|scaffold_632 (542290-542392)

	clu (0.358938)
	pla (0.267344)
	hyp (0.142837)
	ute (0.132784)
	jca (0.11396)