Non-Coding RNA Search

Ss1.1-rpigca0_012568.5

Sequence:


               
               CCTCAAGCCATCCTCATTCTGCTGTCGGGGGCCCTGGCCCTGACCGGGACCTGGGCGGGT
CCCCACTCCCTGAGCTATTTCTACACCGCCGTGTCCCGGCCCGACCGCGGGGAGCCCCGC
TTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCC
AATCCGCGGATGGAGCCGCGGGCGCCGTGGATACAGCAGGAGGGGCAGGACTATTGGGAT
CGGGAGACGCAGATACAAAGGGACAACGCACAGACTTTCCGAGTGAACCTGCGCACAGCT
CTTGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCTTCCAGAGCATGTACGGCTGC
TACTTGGGACCAGACGGGCTCCTCCTCCGAGGGTACAGTCAGTATGGCTACGACAGCGCC
GATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACTGCGGCCCAG
ATCACCAAGCGCAAGTGGGAGGCGGCCGATGAGGCGGAGCAGTGGAGGAGCTACCTGCAG
GGCCTGTGTGTGGAGGGGCTCCGCAGATACCTGGAGATGGGGAAGGACACGCTGCAGCGC
GCAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACCTTG
AGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGC
CAGGACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTC
CAGAAGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCAAGCCATCCTCATTCTGCTGTCGGGGGCCCTGGCCCTGACCGGGACCTGGGCGGGT
CCCCACTCCCTGAGCTATTTCTACACCGCCGTGTCCCGGCCCGACCGCGGGGAGCCCCGC
TTCATCGCCGTCGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCC
AATCCGCGGATGGAGCCGCGGGCGCCGTGGATACAGCAGGAGGGGCAGGACTATTGGGAT
CGGGAGACGCAGATACAAAGGGACAACGCACAGACTTTCCGAGTGAACCTGCGCACAGCT
CTTGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCTTCCAGAGCATGTACGGCTGC
TACTTGGGACCAGACGGGCTCCTCCTCCGAGGGTACAGTCAGTATGGCTACGACAGCGCC
GATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACTGCGGCCCAG
ATCACCAAGCGCAAGTGGGAGGCGGCCGATGAGGCGGAGCAGTGGAGGAGCTACCTGCAG
GGCCTGTGTGTGGAGGGGCTCCGCAGATACCTGGAGATGGGGAAGGACACGCTGCAGCGC
GCAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACCTTG
AGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGC
CAGGACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTC
CAGAAGTGGGCGGCCCTGGTGGTGCCTCCTGGAGAGGAGCAGAGCTAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q68VF3_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68VF3_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               57-329, gnl|bosTau2|chr23 (23096967-23096696)
               

               
               57-329, gnl|Hg17|chr6 (29903802-29904073)
               

               
               57-329, gnl|Mm7|chr17 (34516576-34516305)
               


               
               362-612, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               362-612, gnl|Hg17|chr6 (31347071-31346829)
               

               
               362-612, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               57-329, gnl|bosTau2|chr23 (23096967-23096696)
               

               
               57-329, gnl|Hg17|chr6 (29903802-29904073)
               

               
               57-329, gnl|Mm7|chr17 (34516576-34516305)
               


               
               362-612, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               362-612, gnl|Hg17|chr6 (31347071-31346829)
               

               
               362-612, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               clu (1.3161)
               

               
               cly (0.965135)
               

               
               cag (0.302389)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.3161)
               

               
               cly (0.965135)
               

               
               cag (0.302389)

	57-329, gnl\|bosTau2\|chr23 (23096967-23096696)
	57-329, gnl\|Hg17\|chr6 (29903802-29904073)
	57-329, gnl\|Mm7\|chr17 (34516576-34516305)

	362-612, gnl\|bosTau2\|chr20 (36655627-36655873)
	362-612, gnl\|Hg17\|chr6 (31347071-31346829)
	362-612, gnl\|Mm7\|chr17 (32077846-32077606)