Non-Coding RNA Search

Ss1.1-rpigca0_012810.5

Sequence:


               
               CAAACAGATGAGAGACCGCAACAGCCAACCAGTGGTTAAAAAAATAAAGCCAGGAATCTC
TGCAATGGCAGACACCCCAGAACATTCCAGCGATTACCTTCGTCCTCTTCTGAGCTTCGC
TGCTGCCCATGTGCCTGTGAGGAAGCACAAGGAGACCCCACTGTACATTCTCTGCACAGC
AGGCATGAGGCTCCTCCCTGAGAGGAAGCAGTTGGCTATCTTGGCTGATCTAGTGAAAGA
TTTACCTCTGGAGTTTGACTTCCTCTTTTCTCAGTCTCAGGCAGAAGTGATCTCTGGAAA
GCAGGAAGGTGTTTATGCATGGATCGGAATCAACTTCGTTTTGGGAAGATTTGACCATGA
GGATGAGTCAGATGCTGAGGCTCCCCAGGAATTGGCAACAGGACGCAGAAGGACAGTAGG
GATACTGGATATGGGAGGAGCCTCTCTCCAAATTGCTTATGAAGTTCCTACCTCAACTTC
TGTCCTTCCTCCACAACAGGAAGAAGCTGCAAAGATCTTGCTGGCTGAATTCAACCTGNG
CTGCGATGTGCAACATACTGAACACGTGTACAGGGTTTACGTCACGACTTTTCTGGGTTT
TGGGGGCAACTTTGCCCGACAGCGCTATGAAGACCTTGTGCTGAATGAGACTTTACACAA
AAACAGGTTGCTGGGGCGAAGACCGGTCTGATCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACAGATGAGAGACCGCAACAGCCAACCAGTGGTTAAAAAAATAAAGCCAGGAATCTC
TGCAATGGCAGACACCCCAGAACATTCCAGCGATTACCTTCGTCCTCTTCTGAGCTTCGC
TGCTGCCCATGTGCCTGTGAGGAAGCACAAGGAGACCCCACTGTACATTCTCTGCACAGC
AGGCATGAGGCTCCTCCCTGAGAGGAAGCAGTTGGCTATCTTGGCTGATCTAGTGAAAGA
TTTACCTCTGGAGTTTGACTTCCTCTTTTCTCAGTCTCAGGCAGAAGTGATCTCTGGAAA
GCAGGAAGGTGTTTATGCATGGATCGGAATCAACTTCGTTTTGGGAAGATTTGACCATGA
GGATGAGTCAGATGCTGAGGCTCCCCAGGAATTGGCAACAGGACGCAGAAGGACAGTAGG
GATACTGGATATGGGAGGAGCCTCTCTCCAAATTGCTTATGAAGTTCCTACCTCAACTTC
TGTCCTTCCTCCACAACAGGAAGAAGCTGCAAAGATCTTGCTGGCTGAATTCAACCTGNG
CTGCGATGTGCAACATACTGAACACGTGTACAGGGTTTACGTCACGACTTTTCTGGGTTT
TGGGGGCAACTTTGCCCGACAGCGCTATGAAGACCTTGTGCTGAATGAGACTTTACACAA
AAACAGGTTGCTGGGGCGAAGACCGGTCTGATCCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61871314|ref|XP_584653.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61871314|ref|XP_584653.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               52-205, gnl|bosTau2|chr26 (12036607-12036760)
               

               
               52-205, gnl|Hg17|chr10 (101429470-101429623)
               

               
               52-205, gnl|Mm7|chr19 (43598751-43598904)
               


               
               497-672, gnl|bosTau2|chr26 (12045043-12045219)
               

               
               497-672, gnl|Hg17|chr10 (101445700-101445876)
               

               
               497-672, gnl|Mm7|chr19 (43615619-43615792)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-205, gnl|bosTau2|chr26 (12036607-12036760)
               

               
               52-205, gnl|Hg17|chr10 (101429470-101429623)
               

               
               52-205, gnl|Mm7|chr19 (43598751-43598904)
               


               
               497-672, gnl|bosTau2|chr26 (12045043-12045219)
               

               
               497-672, gnl|Hg17|chr10 (101445700-101445876)
               

               
               497-672, gnl|Mm7|chr19 (43615619-43615792)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.358938)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.358938)

	52-205, gnl\|bosTau2\|chr26 (12036607-12036760)
	52-205, gnl\|Hg17\|chr10 (101429470-101429623)
	52-205, gnl\|Mm7\|chr19 (43598751-43598904)

	497-672, gnl\|bosTau2\|chr26 (12045043-12045219)
	497-672, gnl\|Hg17\|chr10 (101445700-101445876)
	497-672, gnl\|Mm7\|chr19 (43615619-43615792)