Non-Coding RNA Search

Ss1.1-rpigca0_013658.5

Sequence:


               
               TCTGTACCAGCCTGCAGGGCCTGCTGGGCAGCATCGCGGGCGTCATGGCGGCGCTGGGCT
ACCCGCTGCCCCACCCTCTGCCCGGCACTGAGCCCACCTGGGCCCCCGGCCCTGCCCACA
GTGACTTCCTCCAGAAGATGGATGACTTCTGGCTGCTGAAGGAGCTGCAGACCTGGCTGT
GGCGCTCAGCCAAGGACTTCAACCGGCTCAAGAAGAAGATGCAGCCCCCGGCCGCTGCGG
TCACCCTGCACCTGGAGGCCCGCGGCTTCTGACCTCTGACCTTCACCACCTTCTCCCTCC
CGCCCCTCCAAACCCTGCCCCCACTCCAGGAGGGAGAAGTGCAAACGTGGTTGCCAACAC
TTGTCGAGCCAGGGGACAGAAGCCATGAGCCTTGAGCTCTCCGTGGCCTCGTGGCCTGGG
AGCGGGCAATGCGGTAAAGGCCACGGCCTCCCCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTACCAGCCTGCAGGGCCTGCTGGGCAGCATCGCGGGCGTCATGGCGGCGCTGGGCT
ACCCGCTGCCCCACCCTCTGCCCGGCACTGAGCCCACCTGGGCCCCCGGCCCTGCCCACA
GTGACTTCCTCCAGAAGATGGATGACTTCTGGCTGCTGAAGGAGCTGCAGACCTGGCTGT
GGCGCTCAGCCAAGGACTTCAACCGGCTCAAGAAGAAGATGCAGCCCCCGGCCGCTGCGG
TCACCCTGCACCTGGAGGCCCGCGGCTTCTGACCTCTGACCTTCACCACCTTCTCCCTCC
CGCCCCTCCAAACCCTGCCCCCACTCCAGGAGGGAGAAGTGCAAACGTGGTTGCCAACAC
TTGTCGAGCCAGGGGACAGAAGCCATGAGCCTTGAGCTCTCCGTGGCCTCGTGGCCTGGG
AGCGGGCAATGCGGTAAAGGCCACGGCCTCCCCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61872730|ref|XP_580709.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872730|ref|XP_580709.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, - strand, RNAz p=0.96006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.96006

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-434, gnl|bosTau2|chr29 (36275058-36275480)
               

               
               1-434, gnl|Hg17|chr11 (66889454-66889033)
               

               
               1-434, gnl|Mm7|chr19 (4117103-4117527)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-434, gnl|bosTau2|chr29 (36275058-36275480)
               

               
               1-434, gnl|Hg17|chr11 (66889454-66889033)
               

               
               1-434, gnl|Mm7|chr19 (4117103-4117527)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (1.07681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (1.07681)

	1-434, gnl\|bosTau2\|chr29 (36275058-36275480)
	1-434, gnl\|Hg17\|chr11 (66889454-66889033)
	1-434, gnl\|Mm7\|chr19 (4117103-4117527)