Non-Coding RNA Search

Ss1.1-rpigca0_013804.5

Sequence:


               
               CACCATCATTACTATGATAAATGTTTGTGCATGTTCGAGATCAGTCTTACCAACAGTGTA
TAAGTCATTAACAGTCCTAACTGTGGTGTTTTCCTCCAATGCCTTCCAACATCCATCAAC
TAACGTGAGTATCCCCTGGAATTTGGATGCTTTAGCCTAAAGGTGACTGCCACTAAGTGA
CCTGGCTATACGAACACTAACGAATAAGCCCCTTGTGTCGGGCACCCTGAGAGCAGCAAG
GGCACAACCTTGCTGGGTGAGCCACTATGGACACCACACACTGCATAGGACAGTGGCACA
GCCAGGTGTCAGGCAAGGGCCTGGGGGAAGAGAAACTCCTGCTTTGGTCAGACGACAAGT
GCCTTCACAAGTGCTGAGGTATGGAGTCACAAAAACTTGTCATGGTTCCCTTTAACTTTG
TTAGCTTAAAGGACTCATTCCAGAATCTTGTTAGCTGGTTCATTAAAAAGCAAAAGGCAA
GTGAAAGCAATTAACTGAACCAGGAAACTCAGGCCTCCATTCATTCCTCTTAAATAGGCT
GCCTCTTTTCACCTTCTAGGTCATATCCTTTGTGGCTGAGACTTGTTTTTTCTCTCCAGG
GTACATTTAGAGCACAGTTACTGGGCCATTGTTCTGCTCAGCCAGCAAACAACCAGCCTA
GTAGTTAGGGAGCAAGAGGGCCCAGGCAGCTGCTTGTATTCAGGCTGGCAGCTCCTCCGT
GAATGAAGCCCCGAGTGTTCACATGAAGGTTCTCGGGTTACCGGGCCAGCCAGAAATGCT
GGGAGTCTGGGGCAAGGTTAGCAGGTATCGAGCAGGACAAGGTTCCTGTTTAAGAGGCTA
GAAGAGGCACATGGAAACGGATTCTTAATGCAGAGTCCGGGCTTGGCTCACTGAGGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCATCATTACTATGATAAATGTTTGTGCATGTTCGAGATCAGTCTTACCAACAGTGTA
TAAGTCATTAACAGTCCTAACTGTGGTGTTTTCCTCCAATGCCTTCCAACATCCATCAAC
TAACGTGAGTATCCCCTGGAATTTGGATGCTTTAGCCTAAAGGTGACTGCCACTAAGTGA
CCTGGCTATACGAACACTAACGAATAAGCCCCTTGTGTCGGGCACCCTGAGAGCAGCAAG
GGCACAACCTTGCTGGGTGAGCCACTATGGACACCACACACTGCATAGGACAGTGGCACA
GCCAGGTGTCAGGCAAGGGCCTGGGGGAAGAGAAACTCCTGCTTTGGTCAGACGACAAGT
GCCTTCACAAGTGCTGAGGTATGGAGTCACAAAAACTTGTCATGGTTCCCTTTAACTTTG
TTAGCTTAAAGGACTCATTCCAGAATCTTGTTAGCTGGTTCATTAAAAAGCAAAAGGCAA
GTGAAAGCAATTAACTGAACCAGGAAACTCAGGCCTCCATTCATTCCTCTTAAATAGGCT
GCCTCTTTTCACCTTCTAGGTCATATCCTTTGTGGCTGAGACTTGTTTTTTCTCTCCAGG
GTACATTTAGAGCACAGTTACTGGGCCATTGTTCTGCTCAGCCAGCAAACAACCAGCCTA
GTAGTTAGGGAGCAAGAGGGCCCAGGCAGCTGCTTGTATTCAGGCTGGCAGCTCCTCCGT
GAATGAAGCCCCGAGTGTTCACATGAAGGTTCTCGGGTTACCGGGCCAGCCAGAAATGCT
GGGAGTCTGGGGCAAGGTTAGCAGGTATCGAGCAGGACAAGGTTCCTGTTTAAGAGGCTA
GAAGAGGCACATGGAAACGGATTCTTAATGCAGAGTCCGGGCTTGGCTCACTGAGGCCTC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-526, gnl|bosTau2|chr17 (30340915-30340388)
               

               
               1-526, gnl|Hg17|chr12 (109248193-109248761)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-526, gnl|bosTau2|chr17 (30340915-30340388)
               

               
               1-526, gnl|Hg17|chr12 (109248193-109248761)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               clu (0.239292)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	1-526, gnl\|bosTau2\|chr17 (30340915-30340388)
	1-526, gnl\|Hg17\|chr12 (109248193-109248761)