Ss1.1-rpigca0_014881.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGTCGCGCCGTCGCGTCCTCGTCGGCCGTGGCCAGCCCTGCGCGTGCCCTCGCGCTCT CTCGCTCGGCCTCGGGCTGCAGCGGCGCGGCGGCGGCGGCGTCCGGCTCCCGCGGGGCGC GCTCCTCCCCCGCGGCCGCCTCTCCGGCCCCTGCTCCTCCTCCTCCTCGTCGGCGGCCGC TCGGCCCGAGCTGCGCGCGGCAAGATGGCGGCGCCCAGGCCGCCGCCCGCCAGGCTGTCC GGCGTCATGGTGCCCGCGCCCATCCAGGACCTGGAGGCTCTCCGCGCGCTGACGGCGCTC TTCAAAGAGCAGCGGAATCGAGAAACGGCACCCAGGACTATCTTCCAGAGAGTGCTGGAC ATCCTGAAGAAGTCTTCCCGCGCCGTCGAGCTGGCCTGCAGGGAGCCAGCGCAGGTGGAC CACCTGGCCGCCAGCCTGCAGCTGATCACGGAGTGCTTCCGGTGCCTCCGCAACGCCTGC ATCGAGTGCTCCGTGAACCAGAACTCCATCAGGAACTTGGATACAATCGGTGTTGCTGTC GATCTGATTCTTCTTTTTCGAGAGCTGCGAGTGGAGCAGGAATCCCTGCTGACAGCTTTC CGCTGCGGCCTGCAGTTCTTGGGCAACATCGCCTCGCGGAACGAAGCCTCTCAGCGTGTG GTGTGGATGCACGCCTTCCCCGAGCTCTTTCTGTCTTGCTTGAATCATCCAGACAAAAAA ATCGTTGCCTACTCGTCCATGATTTTGTTCACATCCCTCAGCTCTGAGAGGATGAAGGAA CTGGAGGAAAACCTCAACATTGCCATTGACGTGGTGGAAGCTCACCGGAAGCAGCCGGAG TCAGAGTGGCCGTTCTTGATTATTACAGACCACTTTCTGAAAAGCCCGGAATTGGTTAAA GCCATGTATGCCAAAATGAGCAATCAAGAAAGGGTTGCCCTCTTGGACCTCACGATAGCC AAAATAGCGGGAGAGGAGCCCCTGACCAAGGACGACGTCCCTGTGTTCCTGAGCCACGCC GAGTTGGTGGCAAGCGCTTTTGTGGACCAGTGCAGGGCTGTGCTACACCTGACGGCTGAG CAGCCTACCGGCGACGAGGAGGCACTGGCTACAATTAGGCTTCTTGATGTCCTCTGTGAA ATGACTGCTAATACCGATCTGCTCGGCTATCTACAGGTTTTTCCTGGCTTGCTGGAAAGA GTGATTGATCTTTTGCGACTGATTCACGCAGCTGGCAGTGATACCACTAGCATCTTCAGC CCCTGTGCTTCCATAAAAGCAGAGGGCGACATCACTAACGTGGCTGAAGGCTTTAAGTCT CATCTCATTCGTCTGATCGGAAACCTGTGTTACAAGAATAAAGAGAACCAAGACAAGGTC AGCGAGCTGGACGGCATTCCCCTGATCCTGGACAGCTGCGGCATCGACGACAGCAACCCC TTTCTAACCCAGTGGGTGGTGTACGCCATCCGAAACCTCACCGAGGACAACAGCCGGAAC CAGGATTTGATCGCGAAGATGGAGGAGCAGGGCCTGGCGGACCCGTCCCTCCTTAAAAAA ATGGGGTTTGAAGTTGAGAAGAGGGGGGACAAGCTGATCCTGAAGTCTGCTAGTGACACA CCTCAGCTGTGAGTGAACTCTCATCCCCGAGTCTGAACTTCTGGCATCTGTCTCATGGAT TTTCCCATCACCTGCCGTATGTGGAGTTGCAAGTGTTTGAAGAGTTCTCCAGTACCAATT CAAGAACCTGTGAATCTTTTAGATATTAGAGTTCAGTGTGGATAAGCTTAAAAGCGACAT GAGCATTCTGTTGTTTCTTTGCTTTAAAATCCCGTCCGTTCTGCCTTTGTCCTGTAGACA CCCTGTGCGTTTAAGTGAAAAATTGTACCTACTGTGGCTGCAGATAATAAATTCCTCTTG TTGAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGTCGCGCCGTCGCGTCCTCGTCGGCCGTGGCCAGCCCTGCGCGTGCCCTCGCGCTCT CTCGCTCGGCCTCGGGCTGCAGCGGCGCGGCGGCGGCGGCGTCCGGCTCCCGCGGGGCGC GCTCCTCCCCCGCGGCCGCCTCTCCGGCCCCTGCTCCTCCTCCTCCTCGTCGGCGGCCGC TCGGCCCGAGCTGCGCGCGGCAAGATGGCGGCGCCCAGGCCGCCGCCCGCCAGGCTGTCC GGCGTCATGGTGCCCGCGCCCATCCAGGACCTGGAGGCTCTCCGCGCGCTGACGGCGCTC TTCAAAGAGCAGCGGAATCGAGAAACGGCACCCAGGACTATCTTCCAGAGAGTGCTGGAC ATCCTGAAGAAGTCTTCCCGCGCCGTCGAGCTGGCCTGCAGGGAGCCAGCGCAGGTGGAC CACCTGGCCGCCAGCCTGCAGCTGATCACGGAGTGCTTCCGGTGCCTCCGCAACGCCTGC ATCGAGTGCTCCGTGAACCAGAACTCCATCAGGAACTTGGATACAATCGGTGTTGCTGTC GATCTGATTCTTCTTTTTCGAGAGCTGCGAGTGGAGCAGGAATCCCTGCTGACAGCTTTC CGCTGCGGCCTGCAGTTCTTGGGCAACATCGCCTCGCGGAACGAAGCCTCTCAGCGTGTG GTGTGGATGCACGCCTTCCCCGAGCTCTTTCTGTCTTGCTTGAATCATCCAGACAAAAAA ATCGTTGCCTACTCGTCCATGATTTTGTTCACATCCCTCAGCTCTGAGAGGATGAAGGAA CTGGAGGAAAACCTCAACATTGCCATTGACGTGGTGGAAGCTCACCGGAAGCAGCCGGAG TCAGAGTGGCCGTTCTTGATTATTACAGACCACTTTCTGAAAAGCCCGGAATTGGTTAAA GCCATGTATGCCAAAATGAGCAATCAAGAAAGGGTTGCCCTCTTGGACCTCACGATAGCC AAAATAGCGGGAGAGGAGCCCCTGACCAAGGACGACGTCCCTGTGTTCCTGAGCCACGCC GAGTTGGTGGCAAGCGCTTTTGTGGACCAGTGCAGGGCTGTGCTACACCTGACGGCTGAG CAGCCTACCGGCGACGAGGAGGCACTGGCTACAATTAGGCTTCTTGATGTCCTCTGTGAA ATGACTGCTAATACCGATCTGCTCGGCTATCTACAGGTTTTTCCTGGCTTGCTGGAAAGA GTGATTGATCTTTTGCGACTGATTCACGCAGCTGGCAGTGATACCACTAGCATCTTCAGC CCCTGTGCTTCCATAAAAGCAGAGGGCGACATCACTAACGTGGCTGAAGGCTTTAAGTCT CATCTCATTCGTCTGATCGGAAACCTGTGTTACAAGAATAAAGAGAACCAAGACAAGGTC AGCGAGCTGGACGGCATTCCCCTGATCCTGGACAGCTGCGGCATCGACGACAGCAACCCC TTTCTAACCCAGTGGGTGGTGTACGCCATCCGAAACCTCACCGAGGACAACAGCCGGAAC CAGGATTTGATCGCGAAGATGGAGGAGCAGGGCCTGGCGGACCCGTCCCTCCTTAAAAAA ATGGGGTTTGAAGTTGAGAAGAGGGGGGACAAGCTGATCCTGAAGTCTGCTAGTGACACA CCTCAGCTGTGAGTGAACTCTCATCCCCGAGTCTGAACTTCTGGCATCTGTCTCATGGAT TTTCCCATCACCTGCCGTATGTGGAGTTGCAAGTGTTTGAAGAGTTCTCCAGTACCAATT CAAGAACCTGTGAATCTTTTAGATATTAGAGTTCAGTGTGGATAAGCTTAAAAGCGACAT GAGCATTCTGTTGTTTCTTTGCTTTAAAATCCCGTCCGTTCTGCCTTTGTCCTGTAGACA CCCTGTGCGTTTAAGTGAAAAATTGTACCTACTGTGGCTGCAGATAATAAATTCCTCTTG TTGAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-329, gnl|bosTau2|chr5 (74468235-74467903) | |
| 1-329, gnl|Hg17|chr22 (44388244-44388611) | |
| 1-329, gnl|Mm7|chr15 (85418575-85418909) | |
| 694-853, gnl|bosTau2|chr5 (74423326-74423167) | |
| 694-853, gnl|canFam2|chr10 (23453393-23453226) | |
| 694-853, gnl|echTel1|scaffold_209254 (7967-7800) | |
| 694-853, gnl|galGal2|chr1 (67182071-67182244) | |
| 694-853, gnl|hg17|chr22 (44419108-44419275) | |
| 694-853, gnl|Hg17|chr22 (44419107-44419266) | |
| 694-853, gnl|loxAfr1|scaffold_11002 (12976-13143) | |
| 694-853, gnl|mm7|chr15 (85458867-85459034) | |
| 694-853, gnl|Mm7|chr15 (85458866-85459025) | |
| 694-853, gnl|monDom2|scaffold_107 (497379-497548) | |
| 694-853, gnl|oryCun1|scaffold_213867 (112316-112474) | |
| 694-853, gnl|panTro1|chr23 (44757650-44757817) | |
| 694-853, gnl|rheMac2|chr10 (89701189-89701356) | |
| 694-853, gnl|rn3|chr7 (123411881-123412048) | |
| 931-1099, gnl|bosTau2|chr5 (74411749-74411581) | |
| 931-1099, gnl|canFam2|chr10 (23431313-23431136) | |
| 931-1099, gnl|dasNov1|scaffold_110079 (1514-1690) | |
| 931-1099, gnl|echTel1|scaffold_249954 (1478-1302) | |
| 931-1099, gnl|galGal2|chr1 (67201479-67201656) | |
| 931-1099, gnl|hg17|chr22 (44445837-44446014) | |
| 931-1099, gnl|Hg17|chr22 (44445840-44446008) | |
| 931-1099, gnl|loxAfr1|scaffold_11002 (42836-43012) | |
| 931-1099, gnl|mm7|chr15 (85469307-85469483) | |
| 931-1099, gnl|Mm7|chr15 (85469310-85469478) | |
| 931-1099, gnl|monDom2|scaffold_107 (505553-505729) | |
| 931-1099, gnl|oryCun1|scaffold_206638 (35495-35671) | |
| 931-1099, gnl|panTro1|chr23 (44784627-44784804) | |
| 931-1099, gnl|rheMac2|chr10 (89728072-89728249) | |
| 931-1099, gnl|rn3|chr7 (123420769-123420945) | |
| 1207-1382, gnl|bosTau2|chr5 (74401813-74401638) | |
| 1207-1382, gnl|canFam2|chr10 (23419798-23419584) | |
| 1207-1382, gnl|danRer3|chr4 (19985193-19984967) | |
| 1207-1382, gnl|dasNov1|scaffold_33790 (43595-43810) | |
| 1207-1382, gnl|echTel1|scaffold_277578 (52224-52436) | |
| 1207-1382, gnl|galGal2|chr1 (67207707-67207898) | |
| 1207-1382, gnl|hg17|chr22 (44456776-44456991) | |
| 1207-1382, gnl|Hg17|chr22 (44456785-44456960) | |
| 1207-1382, gnl|loxAfr1|scaffold_103051 (8617-8402) | |
| 1207-1382, gnl|mm7|chr15 (85475649-85475859) | |
| 1207-1382, gnl|Mm7|chr15 (85475657-85475832) | |
| 1207-1382, gnl|monDom2|scaffold_107 (512392-512576) | |
| 1207-1382, gnl|oryCun1|scaffold_183191 (683-893) | |
| 1207-1382, gnl|panTro1|chr23 (44795669-44795884) | |
| 1207-1382, gnl|rheMac2|chr10 (89739155-89739370) | |
| 1207-1382, gnl|rn3|chr7 (123428251-123428461) | |
| 1437-1635, gnl|bosTau2|chr5 (74327180-74326981) | |
| 1437-1635, gnl|Hg17|chr22 (44559403-44559602) | |
| 1437-1635, gnl|Mm7|chr15 (85544596-85544795) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-329, gnl|bosTau2|chr5 (74468235-74467903) | |
| 1-329, gnl|Hg17|chr22 (44388244-44388611) | |
| 1-329, gnl|Mm7|chr15 (85418575-85418909) | |
| 694-853, gnl|bosTau2|chr5 (74423326-74423167) | |
| 694-853, gnl|canFam2|chr10 (23453393-23453226) | |
| 694-853, gnl|echTel1|scaffold_209254 (7967-7800) | |
| 694-853, gnl|galGal2|chr1 (67182071-67182244) | |
| 694-853, gnl|hg17|chr22 (44419108-44419275) | |
| 694-853, gnl|Hg17|chr22 (44419107-44419266) | |
| 694-853, gnl|loxAfr1|scaffold_11002 (12976-13143) | |
| 694-853, gnl|mm7|chr15 (85458867-85459034) | |
| 694-853, gnl|Mm7|chr15 (85458866-85459025) | |
| 694-853, gnl|monDom2|scaffold_107 (497379-497548) | |
| 694-853, gnl|oryCun1|scaffold_213867 (112316-112474) | |
| 694-853, gnl|panTro1|chr23 (44757650-44757817) | |
| 694-853, gnl|rheMac2|chr10 (89701189-89701356) | |
| 694-853, gnl|rn3|chr7 (123411881-123412048) | |
| 931-1099, gnl|bosTau2|chr5 (74411749-74411581) | |
| 931-1099, gnl|canFam2|chr10 (23431313-23431136) | |
| 931-1099, gnl|dasNov1|scaffold_110079 (1514-1690) | |
| 931-1099, gnl|echTel1|scaffold_249954 (1478-1302) | |
| 931-1099, gnl|galGal2|chr1 (67201479-67201656) | |
| 931-1099, gnl|hg17|chr22 (44445837-44446014) | |
| 931-1099, gnl|Hg17|chr22 (44445840-44446008) | |
| 931-1099, gnl|loxAfr1|scaffold_11002 (42836-43012) | |
| 931-1099, gnl|mm7|chr15 (85469307-85469483) | |
| 931-1099, gnl|Mm7|chr15 (85469310-85469478) | |
| 931-1099, gnl|monDom2|scaffold_107 (505553-505729) | |
| 931-1099, gnl|oryCun1|scaffold_206638 (35495-35671) | |
| 931-1099, gnl|panTro1|chr23 (44784627-44784804) | |
| 931-1099, gnl|rheMac2|chr10 (89728072-89728249) | |
| 931-1099, gnl|rn3|chr7 (123420769-123420945) | |
| 1207-1382, gnl|bosTau2|chr5 (74401813-74401638) | |
| 1207-1382, gnl|canFam2|chr10 (23419798-23419584) | |
| 1207-1382, gnl|danRer3|chr4 (19985193-19984967) | |
| 1207-1382, gnl|dasNov1|scaffold_33790 (43595-43810) | |
| 1207-1382, gnl|echTel1|scaffold_277578 (52224-52436) | |
| 1207-1382, gnl|galGal2|chr1 (67207707-67207898) | |
| 1207-1382, gnl|hg17|chr22 (44456776-44456991) | |
| 1207-1382, gnl|Hg17|chr22 (44456785-44456960) | |
| 1207-1382, gnl|loxAfr1|scaffold_103051 (8617-8402) | |
| 1207-1382, gnl|mm7|chr15 (85475649-85475859) | |
| 1207-1382, gnl|Mm7|chr15 (85475657-85475832) | |
| 1207-1382, gnl|monDom2|scaffold_107 (512392-512576) | |
| 1207-1382, gnl|oryCun1|scaffold_183191 (683-893) | |
| 1207-1382, gnl|panTro1|chr23 (44795669-44795884) | |
| 1207-1382, gnl|rheMac2|chr10 (89739155-89739370) | |
| 1207-1382, gnl|rn3|chr7 (123428251-123428461) | |
| 1437-1635, gnl|bosTau2|chr5 (74327180-74326981) | |
| 1437-1635, gnl|Hg17|chr22 (44559403-44559602) | |
| 1437-1635, gnl|Mm7|chr15 (85544596-85544795) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| clu (4.66619) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| ebs (0.473205) | |
| ecc (0.46014) | |
| nmm (0.398406) | |
| eru (0.360144) | |
| eye (0.341006) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eje (0.0988338) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (4.66619) | |
| mcp (0.511945) | |
| fhi (0.508733) | |
| ebs (0.473205) | |
| ecc (0.46014) | |
| nmm (0.398406) | |
| eru (0.360144) | |
| eye (0.341006) | |
| hyp (0.285673) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eje (0.0988338) |