Non-Coding RNA Search

Ss1.1-rpigca0_015724.5

Sequence:


               
               TTTTTTTTTTTTTTTTGTTATGTATCCAAATTTATTCAGAGGAATGGTCCACCACGGGCC
TCCGTGGGTCTGTGTACATTCACTTTTTTAAAAAAATGGTTTCCATAAAAGGATTTTTGG
TAGTCACCTAATTTTTAATAGAATATTTATGTACAAAACCCCCGTTTCAAACTACGTACT
GTACAAGAGAAAGGAGAAGCATTGGACGGCATGACTTTAGCAAATAATAAAAATCTGCAA
CGACACCCACAGACTTCCTCCTAGCTGGCTGCTTACGGGAAGGCCAGCACCTCACTGGCA
GCATGTTCAAGACAAACCCTGTCTTCACCCTTCTCTTCGGTGAAATATTTCTTGTACGTT
TTTCTGGGTGCTTGAGAAACCTCGGATACCTGATTAGGCTACAAATTTCTATCATTCCTA
TCATCTAGGAGATGTGATTTTCTTAAAAGCTTTTAAAATGATAATTGTCCAATAGTAACA
GTCCTGTAAGTAAAAATATAGAGCAGTGTTACCAAAATAGAAGCCTTTATTAATAAAAAT
CTTTGGTAGGAACAGTATTTTAAATTCCTCTCAATGATATTTGGCTAGCTAATAAAATAA
ATGCCTTCCACCTTTGAGCTACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTGTTATGTATCCAAATTTATTCAGAGGAATGGTCCACCACGGGCC
TCCGTGGGTCTGTGTACATTCACTTTTTTAAAAAAATGGTTTCCATAAAAGGATTTTTGG
TAGTCACCTAATTTTTAATAGAATATTTATGTACAAAACCCCCGTTTCAAACTACGTACT
GTACAAGAGAAAGGAGAAGCATTGGACGGCATGACTTTAGCAAATAATAAAAATCTGCAA
CGACACCCACAGACTTCCTCCTAGCTGGCTGCTTACGGGAAGGCCAGCACCTCACTGGCA
GCATGTTCAAGACAAACCCTGTCTTCACCCTTCTCTTCGGTGAAATATTTCTTGTACGTT
TTTCTGGGTGCTTGAGAAACCTCGGATACCTGATTAGGCTACAAATTTCTATCATTCCTA
TCATCTAGGAGATGTGATTTTCTTAAAAGCTTTTAAAATGATAATTGTCCAATAGTAACA
GTCCTGTAAGTAAAAATATAGAGCAGTGTTACCAAAATAGAAGCCTTTATTAATAAAAAT
CTTTGGTAGGAACAGTATTTTAAATTCCTCTCAATGATATTTGGCTAGCTAATAAAATAA
ATGCCTTCCACCTTTGAGCTACAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               20-624, gnl|bosTau2|chr29 (41315301-41314694)
               

               
               20-624, gnl|Hg17|chr11 (69713280-69712687)
               

               
               20-624, gnl|Mm7|chr7 (141013795-141014403)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-624, gnl|bosTau2|chr29 (41315301-41314694)
               

               
               20-624, gnl|Hg17|chr11 (69713280-69712687)
               

               
               20-624, gnl|Mm7|chr7 (141013795-141014403)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               clu (0.837521)
               

               
               sag (0.36543)
               

               
               cli (0.305623)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.837521)
               

               
               sag (0.36543)
               

               
               cli (0.305623)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)

	20-624, gnl\|bosTau2\|chr29 (41315301-41314694)
	20-624, gnl\|Hg17\|chr11 (69713280-69712687)
	20-624, gnl\|Mm7\|chr7 (141013795-141014403)

	clu (0.837521)
	sag (0.36543)
	cli (0.305623)
	mgp (0.230681)
	nms (0.213858)
	ldo (0.194005)
	gul (0.177588)