Non-Coding RNA Search

Ss1.1-rpigca0_015781.5

Sequence:


               
               AGAACCCTCACTGTTCCGCACAGCTGTTGACATTTTATTTGGAAGCGTGTGTGTCTGCGG
GCGGGACAGTTATGCAGGAGTGGTACTCTGCAGGCGTCTGCACCGCGGCAGGGCCCCTGC
CCCTTCTGGAAAGTCCCAAATTCTGGCTGACAATGGGGAGCCCTAAATAGCAGAACTGCC
TTTCAGGAAGTAGCAGCCGCCAGGCCAGCTTTCCCACCCTCGGTTGAGGCTGGTGTAAAC
AAGGCCTTTTCTTTCTCTTTCACTTCTGGCTGGAAATTCCAGAGCGTGGAATGCAGAAGA
GGGAGGGCTGTTCTTGTTCCTCCAGCAGAGAAGTCGTTTTATTTGGGGTTCGAGAAGTGG
TTTTCAAGCGGTTGTGTGTGGCTCTGGGACACTTCTCATTCGCCCTGGGACCGGCAAAGG
CGGAAGAGTTGGGCGAGCGGTGAGTGTGTGAGGTCAGGAACCACTCAGGCTGCAGGGGCC
ACCAGCGTCCCCAGCACCCTGTAGGGAGGACAGTGTCAGGCCAGGCCTTGTTCTCAGCCC
CCAAGCCCACCTTCAACTCCACAATCAGGATCTCCAGGCCAGCCAAGAGAGGGGGCGTTG
GGCCAGCCCACGCCCGAGGTTAACAACGAGAGCCATGCTGGGGACAGACGTGGCAGCTTG
GCTACGTGACCACCTGCTGTGCGCTCACCCGTGTGATCCCACGGAGTCCTAACAGCCGCC
TGGAGCCTGTGTGCGTTTCGTAGGGGTCAGGCCGCCTCCCTGTGTTCATGGCTGGGGACT
GGCCCCCACCGCTTACCTGCCTTGAGTGAGCGCCCGTGGCTGTCCATGTGCCACTGGGAA
CCTCCCAGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACCCTCACTGTTCCGCACAGCTGTTGACATTTTATTTGGAAGCGTGTGTGTCTGCGG
GCGGGACAGTTATGCAGGAGTGGTACTCTGCAGGCGTCTGCACCGCGGCAGGGCCCCTGC
CCCTTCTGGAAAGTCCCAAATTCTGGCTGACAATGGGGAGCCCTAAATAGCAGAACTGCC
TTTCAGGAAGTAGCAGCCGCCAGGCCAGCTTTCCCACCCTCGGTTGAGGCTGGTGTAAAC
AAGGCCTTTTCTTTCTCTTTCACTTCTGGCTGGAAATTCCAGAGCGTGGAATGCAGAAGA
GGGAGGGCTGTTCTTGTTCCTCCAGCAGAGAAGTCGTTTTATTTGGGGTTCGAGAAGTGG
TTTTCAAGCGGTTGTGTGTGGCTCTGGGACACTTCTCATTCGCCCTGGGACCGGCAAAGG
CGGAAGAGTTGGGCGAGCGGTGAGTGTGTGAGGTCAGGAACCACTCAGGCTGCAGGGGCC
ACCAGCGTCCCCAGCACCCTGTAGGGAGGACAGTGTCAGGCCAGGCCTTGTTCTCAGCCC
CCAAGCCCACCTTCAACTCCACAATCAGGATCTCCAGGCCAGCCAAGAGAGGGGGCGTTG
GGCCAGCCCACGCCCGAGGTTAACAACGAGAGCCATGCTGGGGACAGACGTGGCAGCTTG
GCTACGTGACCACCTGCTGTGCGCTCACCCGTGTGATCCCACGGAGTCCTAACAGCCGCC
TGGAGCCTGTGTGCGTTTCGTAGGGGTCAGGCCGCCTCCCTGTGTTCATGGCTGGGGACT
GGCCCCCACCGCTTACCTGCCTTGAGTGAGCGCCCGTGGCTGTCCATGTGCCACTGGGAA
CCTCCCAGACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               216-331, + strand, RNAz p=0.6823

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               216-331, + strand, RNAz p=0.6823

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-367, gnl|bosTau2|chr21 (44993914-44993527)
               

               
               1-367, gnl|Hg17|chr14 (99877693-99877318)
               


               
               493-732, gnl|bosTau2|chr21 (44993470-44993242)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-367, gnl|bosTau2|chr21 (44993914-44993527)
               

               
               1-367, gnl|Hg17|chr14 (99877693-99877318)
               


               
               493-732, gnl|bosTau2|chr21 (44993470-44993242)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)
               

               
               jca (0.11396)

	1-367, gnl\|bosTau2\|chr21 (44993914-44993527)
	1-367, gnl\|Hg17\|chr14 (99877693-99877318)

	493-732, gnl\|bosTau2\|chr21 (44993470-44993242)