Ss1.1-rpigca0_015782.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACTCCCCTTCCGAGGTGTTGGGGCTGCGGAATGCGAAGGAGTTATATTATACAAAGTC CCGTGAGACCATTGTGCAAACAAGGTGATGATTGTACAAAGAGTGGTGCTGAATTCCCGA CCTGGAAAAAATGGTAATCCAGTGGCAGAGAATTTCCGAGTAGAAGAAGTAAACTTACCA GAGAATATCAATGAAGGACAAGTGCAAGTCAGAACTCTTTATCTTTCTGTGGATCCTTAC ATGCGTTGTAGAATGAATGAAGACACTGGCTCTGATTATATAACACCTTGGCAGCTGTCT CAGGTGGTTGATGGTGGAGGTGTTGGGATCATAGAAGAAAGCAGACACACAAATTTTACT AAAGGTGATTTTGTGAGTTCTTTCTATTGGCCCTGGCAAACCAAGGTTATTCTGGATGGA AGTATCCTTGAAAAGGTAGACCCACAACTTGTGGATGGACACCTTTCATACTTTCTTGGA GCTATAGGGATGCCTGGTTTGACTTCCTTGATTGGCATACAGGAAAAAGGTCATGTAACT GCTGGATCTAATCAGACAATGGTTGTTAGTGGGGCCGCTGGTGCTTGTGGATCCTTGGCT GGGCAGATTGGCCATTTGATGGGCTGTTCCAGAGTGGTGGGAATTTGTGGAACACATGAG AAGTGCCTCCTTTTGACCTCAGAACTGGGCTTTGATGCTGCAATTAATTATAAAGAGGGG AATGTGGCAGAAAAACTCCATGAGTTATGCCCGGCTGGAGTGGATGTTTACTTTGACAAT GTTGGTGGTGACATCAGTGATACAGTGATAAGTCAGATGAATCAGAACAGCCACATCATC CTGTGTGGTCAGATTTCTCAATACAACAAAGATGTGCCTTATCCTCCTCCACTACCCCCT GCTATAGAAGCAATCCAGAAAGAAAGAAACATCACAAGAGAAAGATTTCTGGTATTAAAT TATAAGGACAAATTTGAGTCTGGTATTCTGCAGCTGAGTCAGTGGTTTAAAGAAGGAAAG CTAAAGATAAAGGAGACTGTGATAAATGGATTGGAAAACATGGGAGCTGCATTCCAGTCC ATGATGACAGGTGGTAACATCGGAAAGCAGATAGTTTGCATCTCAAAAGAAACCTCTTTG TAATCTCTACAGATATCTTTGTAAAGGAAATACAGATTTATTTCCATTTGCACAAAGAAG ATTGTTCAAGATACATTAAAAAATCTTAAGAGTACAGATAACTTTTGATTTAAATGTGAC CATAGGTGGTATTTTCTTAGTTGCACATCATAATTCTTTCCTGTATCCTCAATATTATAT GTGTACTCTACATCCAGTTATTTGTAATTGAATTCATTGTGATCTACTTTTTTTCTTTTG CTAAAATATGATATTTCTATCATATTCTGAAATCACTAGAGATTTGGTATGTTTAATAGA TCATATGAAATAGATTTTTTTAATTAATGGCTTTTATTTAAATAAAATGCTTGAGAAAGC ACATAGTGACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACTCCCCTTCCGAGGTGTTGGGGCTGCGGAATGCGAAGGAGTTATATTATACAAAGTC CCGTGAGACCATTGTGCAAACAAGGTGATGATTGTACAAAGAGTGGTGCTGAATTCCCGA CCTGGAAAAAATGGTAATCCAGTGGCAGAGAATTTCCGAGTAGAAGAAGTAAACTTACCA GAGAATATCAATGAAGGACAAGTGCAAGTCAGAACTCTTTATCTTTCTGTGGATCCTTAC ATGCGTTGTAGAATGAATGAAGACACTGGCTCTGATTATATAACACCTTGGCAGCTGTCT CAGGTGGTTGATGGTGGAGGTGTTGGGATCATAGAAGAAAGCAGACACACAAATTTTACT AAAGGTGATTTTGTGAGTTCTTTCTATTGGCCCTGGCAAACCAAGGTTATTCTGGATGGA AGTATCCTTGAAAAGGTAGACCCACAACTTGTGGATGGACACCTTTCATACTTTCTTGGA GCTATAGGGATGCCTGGTTTGACTTCCTTGATTGGCATACAGGAAAAAGGTCATGTAACT GCTGGATCTAATCAGACAATGGTTGTTAGTGGGGCCGCTGGTGCTTGTGGATCCTTGGCT GGGCAGATTGGCCATTTGATGGGCTGTTCCAGAGTGGTGGGAATTTGTGGAACACATGAG AAGTGCCTCCTTTTGACCTCAGAACTGGGCTTTGATGCTGCAATTAATTATAAAGAGGGG AATGTGGCAGAAAAACTCCATGAGTTATGCCCGGCTGGAGTGGATGTTTACTTTGACAAT GTTGGTGGTGACATCAGTGATACAGTGATAAGTCAGATGAATCAGAACAGCCACATCATC CTGTGTGGTCAGATTTCTCAATACAACAAAGATGTGCCTTATCCTCCTCCACTACCCCCT GCTATAGAAGCAATCCAGAAAGAAAGAAACATCACAAGAGAAAGATTTCTGGTATTAAAT TATAAGGACAAATTTGAGTCTGGTATTCTGCAGCTGAGTCAGTGGTTTAAAGAAGGAAAG CTAAAGATAAAGGAGACTGTGATAAATGGATTGGAAAACATGGGAGCTGCATTCCAGTCC ATGATGACAGGTGGTAACATCGGAAAGCAGATAGTTTGCATCTCAAAAGAAACCTCTTTG TAATCTCTACAGATATCTTTGTAAAGGAAATACAGATTTATTTCCATTTGCACAAAGAAG ATTGTTCAAGATACATTAAAAAATCTTAAGAGTACAGATAACTTTTGATTTAAATGTGAC CATAGGTGGTATTTTCTTAGTTGCACATCATAATTCTTTCCTGTATCCTCAATATTATAT GTGTACTCTACATCCAGTTATTTGTAATTGAATTCATTGTGATCTACTTTTTTTCTTTTG CTAAAATATGATATTTCTATCATATTCTGAAATCACTAGAGATTTGGTATGTTTAATAGA TCATATGAAATAGATTTTTTTAATTAATGGCTTTTATTTAAATAAAATGCTTGAGAAAGC ACATAGTGACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 318-437, - strand, RNAz p=0.666878 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 318-437, - strand, RNAz p=0.666878 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 243-437, gnl|bosTau2|chr10 (60465013-60465207) | |
| 243-437, gnl|Hg17|chr14 (73410478-73410672) | |
| 243-437, gnl|Mm7|chr12 (82297995-82298189) | |
| 814-938, gnl|bosTau2|chr10 (60469677-60469801) | |
| 814-938, gnl|canFam2|chr8 (50150954-50151120) | |
| 814-938, gnl|dasNov1|scaffold_166793 (4518-4350) | |
| 814-938, gnl|echTel1|scaffold_234968 (8576-8407) | |
| 814-938, gnl|fr1|chrUn (130551220-130551081) | |
| 814-938, gnl|galGal2|chr5 (23330506-23330344) | |
| 814-938, gnl|hg17|chr14 (73416509-73416677) | |
| 814-938, gnl|Hg17|chr14 (73416508-73416632) | |
| 814-938, gnl|loxAfr1|scaffold_1035 (97315-97483) | |
| 814-938, gnl|mm7|chr12 (82307759-82307927) | |
| 814-938, gnl|Mm7|chr12 (82307758-82307882) | |
| 814-938, gnl|monDom2|scaffold_8 (61077990-61077826) | |
| 814-938, gnl|oryCun1|scaffold_187834 (27544-27707) | |
| 814-938, gnl|panTro1|chr15 (73194448-73194616) | |
| 814-938, gnl|rheMac2|chr7 (136971727-136971894) | |
| 814-938, gnl|rn3|chr6 (108376484-108376650) | |
| 814-938, gnl|tetNig1|chr10 (10442284-10442177) | |
| 814-938, gnl|xenTro1|scaffold_799 (19805-19672) | |
| 1065-1465, gnl|bosTau2|chr10 (60472648-60473072) | |
| 1065-1465, gnl|Hg17|chr14 (73420555-73420963) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 243-437, gnl|bosTau2|chr10 (60465013-60465207) | |
| 243-437, gnl|Hg17|chr14 (73410478-73410672) | |
| 243-437, gnl|Mm7|chr12 (82297995-82298189) | |
| 814-938, gnl|bosTau2|chr10 (60469677-60469801) | |
| 814-938, gnl|canFam2|chr8 (50150954-50151120) | |
| 814-938, gnl|dasNov1|scaffold_166793 (4518-4350) | |
| 814-938, gnl|echTel1|scaffold_234968 (8576-8407) | |
| 814-938, gnl|fr1|chrUn (130551220-130551081) | |
| 814-938, gnl|galGal2|chr5 (23330506-23330344) | |
| 814-938, gnl|hg17|chr14 (73416509-73416677) | |
| 814-938, gnl|Hg17|chr14 (73416508-73416632) | |
| 814-938, gnl|loxAfr1|scaffold_1035 (97315-97483) | |
| 814-938, gnl|mm7|chr12 (82307759-82307927) | |
| 814-938, gnl|Mm7|chr12 (82307758-82307882) | |
| 814-938, gnl|monDom2|scaffold_8 (61077990-61077826) | |
| 814-938, gnl|oryCun1|scaffold_187834 (27544-27707) | |
| 814-938, gnl|panTro1|chr15 (73194448-73194616) | |
| 814-938, gnl|rheMac2|chr7 (136971727-136971894) | |
| 814-938, gnl|rn3|chr6 (108376484-108376650) | |
| 814-938, gnl|tetNig1|chr10 (10442284-10442177) | |
| 814-938, gnl|xenTro1|scaffold_799 (19805-19672) | |
| 1065-1465, gnl|bosTau2|chr10 (60472648-60473072) | |
| 1065-1465, gnl|Hg17|chr14 (73420555-73420963) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| clu (6.46088) | |
| kid (2.33524) | |
| isp (1.80451) | |
| lun (1.05342) | |
| vin (0.997672) | |
| bfe (0.899146) | |
| cki (0.660939) | |
| mas (0.630915) | |
| pgl (0.592417) | |
| pro (0.512033) | |
| sug (0.509165) | |
| spc (0.453463) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| elu (0.385356) | |
| thg (0.380373) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| cty (0.20816) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| eye (0.170503) | |
| nje (0.16592) | |
| mga (0.160205) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lin (0.145603) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (6.46088) | |
| kid (2.33524) | |
| isp (1.80451) | |
| lun (1.05342) | |
| vin (0.997672) | |
| bfe (0.899146) | |
| cki (0.660939) | |
| mas (0.630915) | |
| pgl (0.592417) | |
| pro (0.512033) | |
| sug (0.509165) | |
| spc (0.453463) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| elu (0.385356) | |
| thg (0.380373) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| cty (0.20816) | |
| ldo (0.194005) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| eye (0.170503) | |
| nje (0.16592) | |
| mga (0.160205) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lin (0.145603) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) |