Ss1.1-rpigca0_016249.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTCGCTGGCTGGCTGGCTACCGCCGAAGGACCGGCGCGCTGAGGTCCCCGCGCCATGC AGCGCTTAGCCATGGACCTACGGATGCTCTCCCGGGAGCTTTCCCTCTACCTGGAGCATC AAGTCCGGGTTGGTTTCTTCGGTTCGGGAGTAGGCTTATCCCTGATCCTGGGTTTCAGCG TCGCTTACGCCTGCTACTACCTGAGCAGCATTGCGAAGAAGCCCCAGCTGGTGACGGGGG GTGAGAGTTTTAGCCGCTTCCTTCAGGACCACTGTCCTGTGGTAACAGAAACATACTACC CGACGGTCTGGTGCTGGGAGAGTCGAGGACAGACACTGCTGAGACCTTTCATCACTTCCA AGCCCCTGGTGCAGTACCGGAATGAACTTATTAAAACTGCAGATGGAGGACAGATTTCAC TGGACTGGTTTGATAATGATAGCAGTAAGTGTTATATGGATGCTAGCACCCGACCTACTG TCTTATTGTTGCCCGGCCTCACTGGAACAAGCAAGGAATCATATATCCTTCATATGATCC ACCTTAGTGAAGAGTTGGGATACAGATGTGTGGTTTTTAACAACAGAGGAGTGGCGGGGG AGAATCTCTTGACACCGAGGACTTACTGTTGTTCAAACACTGAAGACTTGGAGACAGTCA TTCAGCACGTACACAGTCTGTACCCTTCTGCTCCATTCCTGGCAGCAGGGGTTTCAATGG GAGGAATGCTGCTTTTAAATTACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTCGCTGGCTGGCTGGCTACCGCCGAAGGACCGGCGCGCTGAGGTCCCCGCGCCATGC AGCGCTTAGCCATGGACCTACGGATGCTCTCCCGGGAGCTTTCCCTCTACCTGGAGCATC AAGTCCGGGTTGGTTTCTTCGGTTCGGGAGTAGGCTTATCCCTGATCCTGGGTTTCAGCG TCGCTTACGCCTGCTACTACCTGAGCAGCATTGCGAAGAAGCCCCAGCTGGTGACGGGGG GTGAGAGTTTTAGCCGCTTCCTTCAGGACCACTGTCCTGTGGTAACAGAAACATACTACC CGACGGTCTGGTGCTGGGAGAGTCGAGGACAGACACTGCTGAGACCTTTCATCACTTCCA AGCCCCTGGTGCAGTACCGGAATGAACTTATTAAAACTGCAGATGGAGGACAGATTTCAC TGGACTGGTTTGATAATGATAGCAGTAAGTGTTATATGGATGCTAGCACCCGACCTACTG TCTTATTGTTGCCCGGCCTCACTGGAACAAGCAAGGAATCATATATCCTTCATATGATCC ACCTTAGTGAAGAGTTGGGATACAGATGTGTGGTTTTTAACAACAGAGGAGTGGCGGGGG AGAATCTCTTGACACCGAGGACTTACTGTTGTTCAAACACTGAAGACTTGGAGACAGTCA TTCAGCACGTACACAGTCTGTACCCTTCTGCTCCATTCCTGGCAGCAGGGGTTTCAATGG GAGGAATGCTGCTTTTAAATTACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 101-220, + strand, RNAz p=0.582096 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 101-220, + strand, RNAz p=0.582096 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_138340, + |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 1-240, gnl|bosTau2|chr24 (24874781-24875022) | |
| 1-240, gnl|canFam2|chr7 (69374259-69374140) | |
| 1-240, gnl|danRer3|chr2 (4538966-4539095) | |
| 1-240, gnl|dasNov1|scaffold_3382 (87449-87332) | |
| 1-240, gnl|echTel1|scaffold_187236 (1121-984) | |
| 1-240, gnl|fr1|chrUn (118215682-118215553) | |
| 1-240, gnl|galGal2|chr2 (101674271-101674408) | |
| 1-240, gnl|hg17|chr18 (17538452-17538588) | |
| 1-240, gnl|Hg17|chr18 (17538698-17538451) | |
| 1-240, gnl|loxAfr1|scaffold_26949 (6424-6560) | |
| 1-240, gnl|mm7|chr18 (10913069-10913205) | |
| 1-240, gnl|Mm7|chr18 (10913287-10913068) | |
| 1-240, gnl|monDom2|scaffold_21 (36412516-36412653) | |
| 1-240, gnl|oryCun1|scaffold_179180 (42890-42766) | |
| 1-240, gnl|panTro1|chr17 (13437485-13437621) | |
| 1-240, gnl|rheMac2|chr18 (14689613-14689749) | |
| 1-240, gnl|rn3|chr18 (2081864-2082000) | |
| 1-240, gnl|xenTro1|scaffold_549 (377923-377779) | |
| 383-565, gnl|bosTau2|chr24 (24876826-24877008) | |
| 383-565, gnl|canFam2|chr7 (69376302-69376108) | |
| 383-565, gnl|danRer3|chr2 (4505845-4506039) | |
| 383-565, gnl|dasNov1|scaffold_68338 (850-656) | |
| 383-565, gnl|echTel1|scaffold_187236 (3427-3233) | |
| 383-565, gnl|fr1|chrUn (118217926-118217732) | |
| 383-565, gnl|galGal2|chr2 (101669937-101670131) | |
| 383-565, gnl|hg17|chr18 (17536273-17536467) | |
| 383-565, gnl|Hg17|chr18 (17536457-17536275) | |
| 383-565, gnl|loxAfr1|scaffold_26949 (4403-4597) | |
| 383-565, gnl|mm7|chr18 (10911096-10911290) | |
| 383-565, gnl|Mm7|chr18 (10911280-10911098) | |
| 383-565, gnl|monDom2|scaffold_21 (36410318-36410512) | |
| 383-565, gnl|oryCun1|scaffold_179180 (43237-43055) | |
| 383-565, gnl|panTro1|chr17 (13435301-13435495) | |
| 383-565, gnl|rheMac2|chr18 (14687436-14687630) | |
| 383-565, gnl|rn3|chr18 (2077804-2077998) | |
| 383-565, gnl|tetNig1|chr15_random (1359747-1359941) | |
| 383-565, gnl|xenTro1|scaffold_549 (383704-383510) | |
| 611-724, gnl|bosTau2|chr24 (24913713-24913826) | |
| 611-724, gnl|canFam2|chr17 (24095509-24095635) | |
| 611-724, gnl|canFam2|chr7 (69411517-69411362) | |
| 611-724, gnl|danRer3|chr2 (4494494-4494643) | |
| 611-724, gnl|danRer3|chr2 (4494616-4494498) | |
| 611-724, gnl|dasNov1|scaffold_15300 (9772-9646) | |
| 611-724, gnl|dasNov1|scaffold_53822 (1409-1254) | |
| 611-724, gnl|echTel1|scaffold_310566 (11758-11885) | |
| 611-724, gnl|echTel1|scaffold_318187 (5143-5297) | |
| 611-724, gnl|fr1|chrUn (118220267-118220125) | |
| 611-724, gnl|fr1|chrUn (142005296-142005173) | |
| 611-724, gnl|galGal2|chr2 (101666016-101666178) | |
| 611-724, gnl|hg17|chr18 (17498068-17498223) | |
| 611-724, gnl|Hg17|chr18 (17498190-17498077) | |
| 611-724, gnl|hg17|chr2 (27264024-27264151) | |
| 611-724, gnl|loxAfr1|scaffold_20376 (139-266) | |
| 611-724, gnl|loxAfr1|scaffold_20404 (30330-30485) | |
| 611-724, gnl|mm7|chr18 (10865321-10865468) | |
| 611-724, gnl|Mm7|chr18 (10865443-10865330) | |
| 611-724, gnl|mm7|chr5 (29986386-29986513) | |
| 611-724, gnl|monDom2|scaffold_1 (149163383-149163256) | |
| 611-724, gnl|monDom2|scaffold_21 (36386562-36386729) | |
| 611-724, gnl|oryCun1|scaffold_155475 (7962-8117) | |
| 611-724, gnl|panTro1|chr12 (28202647-28202774) | |
| 611-724, gnl|panTro1|chr17 (13398458-13398613) | |
| 611-724, gnl|rheMac2|chr13 (27081993-27082120) | |
| 611-724, gnl|rheMac2|chr18 (14659374-14659529) | |
| 611-724, gnl|rn3|chr18 (2038459-2038606) | |
| 611-724, gnl|rn3|chr6 (25409697-25409570) | |
| 611-724, gnl|tetNig1|chr14 (5128608-5128487) | |
| 611-724, gnl|tetNig1|chr15_random (1358056-1358206) | |
| 611-724, gnl|xenTro1|scaffold_549 (397703-397557) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-240, gnl|bosTau2|chr24 (24874781-24875022) | |
| 1-240, gnl|canFam2|chr7 (69374259-69374140) | |
| 1-240, gnl|danRer3|chr2 (4538966-4539095) | |
| 1-240, gnl|dasNov1|scaffold_3382 (87449-87332) | |
| 1-240, gnl|echTel1|scaffold_187236 (1121-984) | |
| 1-240, gnl|fr1|chrUn (118215682-118215553) | |
| 1-240, gnl|galGal2|chr2 (101674271-101674408) | |
| 1-240, gnl|hg17|chr18 (17538452-17538588) | |
| 1-240, gnl|Hg17|chr18 (17538698-17538451) | |
| 1-240, gnl|loxAfr1|scaffold_26949 (6424-6560) | |
| 1-240, gnl|mm7|chr18 (10913069-10913205) | |
| 1-240, gnl|Mm7|chr18 (10913287-10913068) | |
| 1-240, gnl|monDom2|scaffold_21 (36412516-36412653) | |
| 1-240, gnl|oryCun1|scaffold_179180 (42890-42766) | |
| 1-240, gnl|panTro1|chr17 (13437485-13437621) | |
| 1-240, gnl|rheMac2|chr18 (14689613-14689749) | |
| 1-240, gnl|rn3|chr18 (2081864-2082000) | |
| 1-240, gnl|xenTro1|scaffold_549 (377923-377779) | |
| 383-565, gnl|bosTau2|chr24 (24876826-24877008) | |
| 383-565, gnl|canFam2|chr7 (69376302-69376108) | |
| 383-565, gnl|danRer3|chr2 (4505845-4506039) | |
| 383-565, gnl|dasNov1|scaffold_68338 (850-656) | |
| 383-565, gnl|echTel1|scaffold_187236 (3427-3233) | |
| 383-565, gnl|fr1|chrUn (118217926-118217732) | |
| 383-565, gnl|galGal2|chr2 (101669937-101670131) | |
| 383-565, gnl|hg17|chr18 (17536273-17536467) | |
| 383-565, gnl|Hg17|chr18 (17536457-17536275) | |
| 383-565, gnl|loxAfr1|scaffold_26949 (4403-4597) | |
| 383-565, gnl|mm7|chr18 (10911096-10911290) | |
| 383-565, gnl|Mm7|chr18 (10911280-10911098) | |
| 383-565, gnl|monDom2|scaffold_21 (36410318-36410512) | |
| 383-565, gnl|oryCun1|scaffold_179180 (43237-43055) | |
| 383-565, gnl|panTro1|chr17 (13435301-13435495) | |
| 383-565, gnl|rheMac2|chr18 (14687436-14687630) | |
| 383-565, gnl|rn3|chr18 (2077804-2077998) | |
| 383-565, gnl|tetNig1|chr15_random (1359747-1359941) | |
| 383-565, gnl|xenTro1|scaffold_549 (383704-383510) | |
| 611-724, gnl|bosTau2|chr24 (24913713-24913826) | |
| 611-724, gnl|canFam2|chr17 (24095509-24095635) | |
| 611-724, gnl|canFam2|chr7 (69411517-69411362) | |
| 611-724, gnl|danRer3|chr2 (4494494-4494643) | |
| 611-724, gnl|danRer3|chr2 (4494616-4494498) | |
| 611-724, gnl|dasNov1|scaffold_15300 (9772-9646) | |
| 611-724, gnl|dasNov1|scaffold_53822 (1409-1254) | |
| 611-724, gnl|echTel1|scaffold_310566 (11758-11885) | |
| 611-724, gnl|echTel1|scaffold_318187 (5143-5297) | |
| 611-724, gnl|fr1|chrUn (118220267-118220125) | |
| 611-724, gnl|fr1|chrUn (142005296-142005173) | |
| 611-724, gnl|galGal2|chr2 (101666016-101666178) | |
| 611-724, gnl|hg17|chr18 (17498068-17498223) | |
| 611-724, gnl|Hg17|chr18 (17498190-17498077) | |
| 611-724, gnl|hg17|chr2 (27264024-27264151) | |
| 611-724, gnl|loxAfr1|scaffold_20376 (139-266) | |
| 611-724, gnl|loxAfr1|scaffold_20404 (30330-30485) | |
| 611-724, gnl|mm7|chr18 (10865321-10865468) | |
| 611-724, gnl|Mm7|chr18 (10865443-10865330) | |
| 611-724, gnl|mm7|chr5 (29986386-29986513) | |
| 611-724, gnl|monDom2|scaffold_1 (149163383-149163256) | |
| 611-724, gnl|monDom2|scaffold_21 (36386562-36386729) | |
| 611-724, gnl|oryCun1|scaffold_155475 (7962-8117) | |
| 611-724, gnl|panTro1|chr12 (28202647-28202774) | |
| 611-724, gnl|panTro1|chr17 (13398458-13398613) | |
| 611-724, gnl|rheMac2|chr13 (27081993-27082120) | |
| 611-724, gnl|rheMac2|chr18 (14659374-14659529) | |
| 611-724, gnl|rn3|chr18 (2038459-2038606) | |
| 611-724, gnl|rn3|chr6 (25409697-25409570) | |
| 611-724, gnl|tetNig1|chr14 (5128608-5128487) | |
| 611-724, gnl|tetNig1|chr15_random (1358056-1358206) | |
| 611-724, gnl|xenTro1|scaffold_549 (397703-397557) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.31224) | |
| cki (0.165235) | |
| clu (0.119646) |