Non-Coding RNA Search

Ss1.1-rpigca0_016271.5

Sequence:


               
               AAAAAATTCCTCTTTTTTCTTACAGGAAATGACAGGTTGCATGTACGAGGCGTACAGAAA
ATGGGAATCTTATTTCGTTGTCCTGAAACTTTGAGTGAAAGAGATAACCCAAGGCCACTG
ACCTGTCATAATATTCTGGACCTCCCTAAATACTCGACAATGGAAAGAATGGAGGAAGCA
CTTCAAGTGGCCATCAACAACCACAAAGGGTTTACCTCACCCAGAGTCACAGGGTGACAG
TGACCTCAGAGAGGCTCAGGTTGCAGGTCCTCACCCTTTGATCCTTCTGTTCTTCTTTAG
GTCTAATTAGCACAAAGAGTCGATGGACTTTTTGGCATTAGTTGGCAAGTGCTGGAACAC
AGGTGATGAGTCAAAGATAATATTTTTAACGAATCAACATTTCCTGACCCCTTAACTTGC
TATTAGAATGCTTGCTTTTTACGGAATTATTTCCTGAATAATAATTATCATGTGAAAATA
AACTGGATATGGAGGTCTCTTGTGGTACAGTGGGTTCTCCGGAGGTTAAGGATCCAGCGT
TGTCACTGCAGCGGCTTGGGTTGCTGTTGGCATGAGTTGGATTCCTGCCCTGGAAACATC
CACATGCCACAGGCATGGTCAAAACAATTTAAATCAAAATAAGATGAATATTAAAAAATA
ACAGATATTTTTAAAAATACTGTATATTGAATATACACTGCTTGCAAATATGAAGGACAT
GCTGAAGTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATTCCTCTTTTTTCTTACAGGAAATGACAGGTTGCATGTACGAGGCGTACAGAAA
ATGGGAATCTTATTTCGTTGTCCTGAAACTTTGAGTGAAAGAGATAACCCAAGGCCACTG
ACCTGTCATAATATTCTGGACCTCCCTAAATACTCGACAATGGAAAGAATGGAGGAAGCA
CTTCAAGTGGCCATCAACAACCACAAAGGGTTTACCTCACCCAGAGTCACAGGGTGACAG
TGACCTCAGAGAGGCTCAGGTTGCAGGTCCTCACCCTTTGATCCTTCTGTTCTTCTTTAG
GTCTAATTAGCACAAAGAGTCGATGGACTTTTTGGCATTAGTTGGCAAGTGCTGGAACAC
AGGTGATGAGTCAAAGATAATATTTTTAACGAATCAACATTTCCTGACCCCTTAACTTGC
TATTAGAATGCTTGCTTTTTACGGAATTATTTCCTGAATAATAATTATCATGTGAAAATA
AACTGGATATGGAGGTCTCTTGTGGTACAGTGGGTTCTCCGGAGGTTAAGGATCCAGCGT
TGTCACTGCAGCGGCTTGGGTTGCTGTTGGCATGAGTTGGATTCCTGCCCTGGAAACATC
CACATGCCACAGGCATGGTCAAAACAATTTAAATCAAAATAAGATGAATATTAAAAAATA
ACAGATATTTTTAAAAATACTGTATATTGAATATACACTGCTTGCAAATATGAAGGACAT
GCTGAAGTTTGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-294, gnl|bosTau2|chr4 (31155192-31154910)
               

               
               14-294, gnl|Hg17|chr4 (89720564-89720839)
               

               
               14-294, gnl|Mm7|chr6 (57630815-57631098)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-294, gnl|bosTau2|chr4 (31155192-31154910)
               

               
               14-294, gnl|Hg17|chr4 (89720564-89720839)
               

               
               14-294, gnl|Mm7|chr6 (57630815-57631098)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbl (0.573987)
               

               
               clu (0.239292)
               

               
               nje (0.16592)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)
               

               
               clu (0.239292)
               

               
               nje (0.16592)
               

               
               cty (0.10408)

	14-294, gnl\|bosTau2\|chr4 (31155192-31154910)
	14-294, gnl\|Hg17\|chr4 (89720564-89720839)
	14-294, gnl\|Mm7\|chr6 (57630815-57631098)