Non-Coding RNA Search

Ss1.1-rpigca0_016524.5

Sequence:


               
               GGCTTTGATTCAGATTGAGGAGCGTGCGATTCAAGATTTACTGGTTTTCTATGAGGCATT
TGGCAACCCTGATGAGTTTGTCATTGTTGAAAGGACACCACAGGGACCACTGGCAGTACC
TATGTGGAATAAGCACGGATGCTAGTTCACCATGGACTTGAGATACATTTTTCATAAATT
GTGATTGTTATAAATAAATGCTGTGGCAGAAGATTGGTAACAGCATTCTAGATAGAATAA
GAAAGGGTCTAATTTCTTTACTGCATTTTGAGCATATAATGTTTATATGATTAAAAAGAA
ATTCCTCAGAATTGTGATTTTAGTAACTATGTAAAGATGTGTGAGAGGAAAAACTTAGTA
GATTAAGTTTAAATAGAACTATTTATTCTGAATAGTCTTAAAAGGAAAACATGAGTGATT
GAAGTATAAAATTTAAGAGTGATGCATTAAAGATAATTTCATTTGAGAATTTGGGATAAG
TAATTTAGAAGATTTTTGCCAAATAGCTGTCTTTTTTTAGTGTAATACCGATGAACTTAA
ATTAGGAGCATCAGCCATTACTTCTGATTCATTAATGGTCAAAATTTTGTGTTTGCTGCA
GTAGTTATGTCTCCATTCATGTGTCTTTTGATCAGGCATTGGGTGTTCTGGGTATTTAAA
ACCTGAACTGCTTGAATGTCATATTATTTCAGCTTGAACAGCACATTCTCCATTTTGCAT
TGAACTGTAGAATGTGGTAGAAAGAAAGGAAGAGTCTAAGATAATAGTTCCTTTGTGAGA
TTTGGAGTTACTATGGGGTTTGTTATTGGTTGGGATGAGGAGACCTTTTAGAAAACTTTA
ACACTTGGAAAAATTCTTTCACAATTAGGCTTTTATAATAAATACTTCATTATACATCCA
AGAACTGAAAAATCTGCAAGAATTTTGGTTTATAGTTACCTTTACAATGTTACATAATCA
AATTCTTTGAGCCTGGGTTATAGGAATAGACATTATTTTCTTTACAGTATGCTGTTTGGG
TTGTTTTTGAATGTTTAAAGATTTTAAAAACAAATGTTAAATTTGTGCTCCTAGACAATT
TGGGAAGGCTAATTTTTCTGGGACATAATAAGCCTAGGGGAAAGGGGCAAATTACTGCTA
TAATTAGGTTGATAAAAATAGGCTGAAATTAACCCAACAGGAGGTTTAGCTCCACCCAGA
GCAGCAGACTTGTAAGCAAATGTGCAATAAAAACTAATGTTGATCACTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTGATTCAGATTGAGGAGCGTGCGATTCAAGATTTACTGGTTTTCTATGAGGCATT
TGGCAACCCTGATGAGTTTGTCATTGTTGAAAGGACACCACAGGGACCACTGGCAGTACC
TATGTGGAATAAGCACGGATGCTAGTTCACCATGGACTTGAGATACATTTTTCATAAATT
GTGATTGTTATAAATAAATGCTGTGGCAGAAGATTGGTAACAGCATTCTAGATAGAATAA
GAAAGGGTCTAATTTCTTTACTGCATTTTGAGCATATAATGTTTATATGATTAAAAAGAA
ATTCCTCAGAATTGTGATTTTAGTAACTATGTAAAGATGTGTGAGAGGAAAAACTTAGTA
GATTAAGTTTAAATAGAACTATTTATTCTGAATAGTCTTAAAAGGAAAACATGAGTGATT
GAAGTATAAAATTTAAGAGTGATGCATTAAAGATAATTTCATTTGAGAATTTGGGATAAG
TAATTTAGAAGATTTTTGCCAAATAGCTGTCTTTTTTTAGTGTAATACCGATGAACTTAA
ATTAGGAGCATCAGCCATTACTTCTGATTCATTAATGGTCAAAATTTTGTGTTTGCTGCA
GTAGTTATGTCTCCATTCATGTGTCTTTTGATCAGGCATTGGGTGTTCTGGGTATTTAAA
ACCTGAACTGCTTGAATGTCATATTATTTCAGCTTGAACAGCACATTCTCCATTTTGCAT
TGAACTGTAGAATGTGGTAGAAAGAAAGGAAGAGTCTAAGATAATAGTTCCTTTGTGAGA
TTTGGAGTTACTATGGGGTTTGTTATTGGTTGGGATGAGGAGACCTTTTAGAAAACTTTA
ACACTTGGAAAAATTCTTTCACAATTAGGCTTTTATAATAAATACTTCATTATACATCCA
AGAACTGAAAAATCTGCAAGAATTTTGGTTTATAGTTACCTTTACAATGTTACATAATCA
AATTCTTTGAGCCTGGGTTATAGGAATAGACATTATTTTCTTTACAGTATGCTGTTTGGG
TTGTTTTTGAATGTTTAAAGATTTTAAAAACAAATGTTAAATTTGTGCTCCTAGACAATT
TGGGAAGGCTAATTTTTCTGGGACATAATAAGCCTAGGGGAAAGGGGCAAATTACTGCTA
TAATTAGGTTGATAAAAATAGGCTGAAATTAACCCAACAGGAGGTTTAGCTCCACCCAGA
GCAGCAGACTTGTAAGCAAATGTGCAATAAAAACTAATGTTGATCACTAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               9-1245, gnl|bosTau2|chr9 (9360500-9361782)
               

               
               9-1245, gnl|Hg17|chr6 (82937997-82936681)
               

               
               9-1245, gnl|Mm7|chr9 (85786733-85785578)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1245, gnl|bosTau2|chr9 (9360500-9361782)
               

               
               9-1245, gnl|Hg17|chr6 (82937997-82936681)
               

               
               9-1245, gnl|Mm7|chr9 (85786733-85785578)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               clu (2.99115)
               

               
               thg (0.507164)
               

               
               ret (0.3862)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (2.99115)
               

               
               thg (0.507164)
               

               
               ret (0.3862)
               

               
               lyg (0.266205)
               

               
               sug (0.254582)
               

               
               ece (0.229305)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               lin (0.145603)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	9-1245, gnl\|bosTau2\|chr9 (9360500-9361782)
	9-1245, gnl\|Hg17\|chr6 (82937997-82936681)
	9-1245, gnl\|Mm7\|chr9 (85786733-85785578)

	clu (2.99115)
	thg (0.507164)
	ret (0.3862)
	lyg (0.266205)
	sug (0.254582)
	ece (0.229305)
	gul (0.177588)
	mcp (0.170648)
	lun (0.150489)
	lin (0.145603)
	eru (0.120048)
	cty (0.10408)
	eje (0.0988338)