Non-Coding RNA Search

Ss1.1-rpigca0_016533.5

Sequence:


               
               GGTGCCCAAACACGTAGCTATTAGTTCAAATACCGGCTAAATCCCTATGTCGTAAACAGG
AGCACTGAGCCAGTGACTCAGGTTTTCGACCGTTTATGCTATAAAAACAAAATGACACTC
GGCCAGTGGCTTACCCGCCTGGCCCTGAAAGGCAGATGCTGGGCAGGAGGGAGCTGAGGG
CGGCCTCCATCTAGGAAGAGGGAAAAGCAGCAAAGCTCCTGGTGGGGATGAGTGACAGCT
CCTGCCTGATCTTATGGCTCTTGGCCAGCAGGGAAAGAAAAGGCTTCTGTGGGAGACCGG
CCCAGAGGTGGGGGGTGTGTAGGAGTTGGGCTTCATTTGGGGTAGGTGGAGGGGAGTTTC
CTTTGAATCAGAAATCCCAAGAGTCAGAGCGGGACGTGCTTACCCAGCACACTGGAGAGA
GAGGGATGGGAGGGAGAGAGAAAGAGAGAGAGAAACTTCTTTTCCAAGATGAGGCAGTGA
GGCCCCAGTCTTAAAAGTTATTTATTTGACTGGATAACACCCTCTTCTATGTCTCCGTAG
TGTTGTATTGAAAAGTTTAAGTCATCCCCTAAGCATATTGGAGAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCCCAAACACGTAGCTATTAGTTCAAATACCGGCTAAATCCCTATGTCGTAAACAGG
AGCACTGAGCCAGTGACTCAGGTTTTCGACCGTTTATGCTATAAAAACAAAATGACACTC
GGCCAGTGGCTTACCCGCCTGGCCCTGAAAGGCAGATGCTGGGCAGGAGGGAGCTGAGGG
CGGCCTCCATCTAGGAAGAGGGAAAAGCAGCAAAGCTCCTGGTGGGGATGAGTGACAGCT
CCTGCCTGATCTTATGGCTCTTGGCCAGCAGGGAAAGAAAAGGCTTCTGTGGGAGACCGG
CCCAGAGGTGGGGGGTGTGTAGGAGTTGGGCTTCATTTGGGGTAGGTGGAGGGGAGTTTC
CTTTGAATCAGAAATCCCAAGAGTCAGAGCGGGACGTGCTTACCCAGCACACTGGAGAGA
GAGGGATGGGAGGGAGAGAGAAAGAGAGAGAGAAACTTCTTTTCCAAGATGAGGCAGTGA
GGCCCCAGTCTTAAAAGTTATTTATTTGACTGGATAACACCCTCTTCTATGTCTCCGTAG
TGTTGTATTGAAAAGTTTAAGTCATCCCCTAAGCATATTGGAGAAATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, - strand, RNAz p=0.985714

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.985714

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-422, gnl|bosTau2|chr15 (40424225-40423806)
               

               
               1-422, gnl|Hg17|chr11 (34628543-34628959)
               

               
               1-422, gnl|Mm7|chr2 (103126039-103125679)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-422, gnl|bosTau2|chr15 (40424225-40423806)
               

               
               1-422, gnl|Hg17|chr11 (34628543-34628959)
               

               
               1-422, gnl|Mm7|chr2 (103126039-103125679)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.598229)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.598229)

	1-422, gnl\|bosTau2\|chr15 (40424225-40423806)
	1-422, gnl\|Hg17\|chr11 (34628543-34628959)
	1-422, gnl\|Mm7\|chr2 (103126039-103125679)