Non-Coding RNA Search

Ss1.1-rpigca0_016566.5

Sequence:


               
               CTCATCAGAAAATTCAGATAATGGTAAAGAAGATCTGGAGTCTGAAAATCTATCTGACAT
GGTACAGAAGATTGCTATCACAGAGCCAATCGACTAAACACACTTTCTCAACTCTATACC
TACAGATATGTTCCACTTAAGCTCTTCTTGAACTAAAAGATCAAATAGGAGAAGAAAAGT
ATTTGTAGATACAAAAAAAGTTTTAAGGGGAATGATTGTACATAAAAGGTCATATCTCTA
ACATTTATAAGTATTATAAATAATATGTATATTTATTACTTTAAAAGCTACGTGTTAATA
TTTCACTTGCCTGTATCAGAAAAAGTATAGTGGGTTTTCTTGTTGTTGTTGTTCTTTTTT
TTCTTTTTAGGGCCACACCCACGGAATATAGAAGTTCCCAGGCTAGGGGCGAATCAGAGC
TACAGCTGCCGGCCTGGCCTACGCCATAGCCACAGCAAAACAGGATCTGAGCTGCATCTG
TGATCTACACCATGGCTCATGGCAATGGCAGATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCAGAAAATTCAGATAATGGTAAAGAAGATCTGGAGTCTGAAAATCTATCTGACAT
GGTACAGAAGATTGCTATCACAGAGCCAATCGACTAAACACACTTTCTCAACTCTATACC
TACAGATATGTTCCACTTAAGCTCTTCTTGAACTAAAAGATCAAATAGGAGAAGAAAAGT
ATTTGTAGATACAAAAAAAGTTTTAAGGGGAATGATTGTACATAAAAGGTCATATCTCTA
ACATTTATAAGTATTATAAATAATATGTATATTTATTACTTTAAAAGCTACGTGTTAATA
TTTCACTTGCCTGTATCAGAAAAAGTATAGTGGGTTTTCTTGTTGTTGTTGTTCTTTTTT
TTCTTTTTAGGGCCACACCCACGGAATATAGAAGTTCCCAGGCTAGGGGCGAATCAGAGC
TACAGCTGCCGGCCTGGCCTACGCCATAGCCACAGCAAAACAGGATCTGAGCTGCATCTG
TGATCTACACCATGGCTCATGGCAATGGCAGATCCT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-329, gnl|bosTau2|chr1 (14597113-14597454)
               

               
               1-329, gnl|Hg17|chr21 (14780200-14779856)
               

               
               1-329, gnl|Mm7|chr16 (75856832-75856506)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-329, gnl|bosTau2|chr1 (14597113-14597454)
               

               
               1-329, gnl|Hg17|chr21 (14780200-14779856)
               

               
               1-329, gnl|Mm7|chr16 (75856832-75856506)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               clu (0.239292)
               

               
               ill (0.175593)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               ill (0.175593)

	1-329, gnl\|bosTau2\|chr1 (14597113-14597454)
	1-329, gnl\|Hg17\|chr21 (14780200-14779856)
	1-329, gnl\|Mm7\|chr16 (75856832-75856506)