Ss1.1-rpigca0_016575.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGAGGAAATTCAGAAACTGATGGGGCAGATACATCAGCTGCGATCCGAGTTACAGGAC ATGGAAGCTCAGCAGGTTAGTGAAGCAGAATCAGCAAGAGAACGGCTACAGGATCTGCAA GACCAAATAGCTGGACAGAAAGCATCTAAACAAGAACTCGAGGCCGAGTTGGAGCGACAG AAGCAGGAATTTCACTACATGGAAGAAGATCTGTATCGAACAAAGAACACATTGCAAAGC AGAATTAAAGATCGAGAAGATGAGATTCAGAAACTCAGGAATCAGCTTACCAATAAAACT TTAAGCAATAGCAGTCAGTCCGAGTTAGAGAATCGACTCCATCAGCTGACAGAGACGCTC ATCCAGAAGCAGACCATGCTGGAGAGCCTGAGCACGGAGAAGAACTCCCTCGTCTTCCAG CTGGAGCGCCTGGAGCAGCAGATGAACTCTGCCTCTGGAAGCAGTAGCAACGGGTCTTCT ATTAACATGTCTGGAGTTGACAGTGGAGAAGGCACACGTCTGCGAAATGTTCCTGTTCTT TTTAACGACACAGAAACTAACTTGGCAGGAATGTATGGAAAAGTCCGCAAAGCTGCTAGT TCAATTGACCAATTTAGCATCCGTCTGGGAATTTTTCTCCGAAGATACCCCATAGCACGA GTTTTTGTAATTATATATATGGCTTTGCTTCACCTGTGGGTCATGATCGTTCTGTTGACG TACACACCAGAAATGCACCATGACCAACCACATGGCAAGTGAACTCAGCCCGGCCGCTTC AGTGCTTGGTTGTCTGTCTCCAGTCTCCAGTCTGCCAAGGGGTCACTTGCTTAAACTTCC TGAGAAGGGTGCACAAGATTACTTTACAAGCTTTTAACTTTTTAAGTTATTATACAAGTA CTGTGCTACCTAAATCTTCTTCTGATTTCCTTCAGCTGGTAAGAGTTTTCTAAAATGAAC AGTAATTTAATGAGCTGAGCTCTGCTTTTTCTGAGGGTCAGTGGTGCAGTGTACATATGT ACACACAGATGCTGGGGTTGTTTGCCTCTGTACAGACCATCCTGTAGCTTAGGTGATGTT CATTATGGGTTATAATCAGGGAAACTAATTGTATTTAGTAATATAAATAAAATGTTTTCC TTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGAGGAAATTCAGAAACTGATGGGGCAGATACATCAGCTGCGATCCGAGTTACAGGAC ATGGAAGCTCAGCAGGTTAGTGAAGCAGAATCAGCAAGAGAACGGCTACAGGATCTGCAA GACCAAATAGCTGGACAGAAAGCATCTAAACAAGAACTCGAGGCCGAGTTGGAGCGACAG AAGCAGGAATTTCACTACATGGAAGAAGATCTGTATCGAACAAAGAACACATTGCAAAGC AGAATTAAAGATCGAGAAGATGAGATTCAGAAACTCAGGAATCAGCTTACCAATAAAACT TTAAGCAATAGCAGTCAGTCCGAGTTAGAGAATCGACTCCATCAGCTGACAGAGACGCTC ATCCAGAAGCAGACCATGCTGGAGAGCCTGAGCACGGAGAAGAACTCCCTCGTCTTCCAG CTGGAGCGCCTGGAGCAGCAGATGAACTCTGCCTCTGGAAGCAGTAGCAACGGGTCTTCT ATTAACATGTCTGGAGTTGACAGTGGAGAAGGCACACGTCTGCGAAATGTTCCTGTTCTT TTTAACGACACAGAAACTAACTTGGCAGGAATGTATGGAAAAGTCCGCAAAGCTGCTAGT TCAATTGACCAATTTAGCATCCGTCTGGGAATTTTTCTCCGAAGATACCCCATAGCACGA GTTTTTGTAATTATATATATGGCTTTGCTTCACCTGTGGGTCATGATCGTTCTGTTGACG TACACACCAGAAATGCACCATGACCAACCACATGGCAAGTGAACTCAGCCCGGCCGCTTC AGTGCTTGGTTGTCTGTCTCCAGTCTCCAGTCTGCCAAGGGGTCACTTGCTTAAACTTCC TGAGAAGGGTGCACAAGATTACTTTACAAGCTTTTAACTTTTTAAGTTATTATACAAGTA CTGTGCTACCTAAATCTTCTTCTGATTTCCTTCAGCTGGTAAGAGTTTTCTAAAATGAAC AGTAATTTAATGAGCTGAGCTCTGCTTTTTCTGAGGGTCAGTGGTGCAGTGTACATATGT ACACACAGATGCTGGGGTTGTTTGCCTCTGTACAGACCATCCTGTAGCTTAGGTGATGTT CATTATGGGTTATAATCAGGGAAACTAATTGTATTTAGTAATATAAATAAAATGTTTTCC TTTTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 282-480, - strand, RNAz p=0.882689 | |
| 993-1149, + strand, RNAz p=0.640719 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 282-480, - strand, RNAz p=0.882689 | |
| 993-1149, + strand, RNAz p=0.640719 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_005113, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 43-187, gnl|bosTau2|chr21 (36187339-36187195) | |
| 43-187, gnl|Hg17|chr14 (92355791-92355935) | |
| 43-187, gnl|Mm7|chr12 (99982402-99982543) | |
| 282-512, gnl|bosTau2|chr21 (36184203-36183973) | |
| 282-512, gnl|canFam2|chr8 (4899085-4899317) | |
| 282-512, gnl|danRer3|chr13 (34510797-34511015) | |
| 282-512, gnl|dasNov1|scaffold_7020 (493-725) | |
| 282-512, gnl|echTel1|scaffold_285863 (26732-26500) | |
| 282-512, gnl|fr1|chrUn (262959978-262959748) | |
| 282-512, gnl|galGal2|chr5 (41658978-41659210) | |
| 282-512, gnl|hg17|chr14 (92369217-92369449) | |
| 282-512, gnl|Hg17|chr14 (92369216-92369446) | |
| 282-512, gnl|mm7|chr12 (99987304-99987536) | |
| 282-512, gnl|Mm7|chr12 (99987303-99987533) | |
| 282-512, gnl|monDom2|scaffold_8 (30989877-30990106) | |
| 282-512, gnl|oryCun1|scaffold_178453 (81690-81915) | |
| 282-512, gnl|panTro1|chr15 (92772678-92772910) | |
| 282-512, gnl|rheMac2|chr7 (156035328-156035560) | |
| 282-512, gnl|rn3|chr6 (126763550-126763782) | |
| 282-512, gnl|tetNig1|chr10 (11514715-11514919) | |
| 282-512, gnl|xenTro1|scaffold_22 (3072666-3072898) | |
| 681-1149, gnl|bosTau2|chr21 (36178217-36177747) | |
| 681-1149, gnl|canFam2|chr8 (4905204-4904821) | |
| 681-1149, gnl|echTel1|scaffold_285863 (20289-20639) | |
| 681-1149, gnl|Hg17|chr14 (92375463-92375926) | |
| 681-1149, gnl|hg17|chr5 (39204683-39205066) | |
| 681-1149, gnl|mm7|chr12 (99993200-99992824) | |
| 681-1149, gnl|Mm7|chr12 (99992740-99993201) | |
| 681-1149, gnl|monDom2|scaffold_8 (30995320-30994881) | |
| 681-1149, gnl|oryCun1|scaffold_178453 (82525-82146) | |
| 681-1149, gnl|panTro1|chr4 (77519931-77519551) | |
| 681-1149, gnl|rheMac2|chr6 (38992392-38992775) | |
| 681-1149, gnl|rn3|chr6 (126769622-126769263) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-187, gnl|bosTau2|chr21 (36187339-36187195) | |
| 43-187, gnl|Hg17|chr14 (92355791-92355935) | |
| 43-187, gnl|Mm7|chr12 (99982402-99982543) | |
| 282-512, gnl|bosTau2|chr21 (36184203-36183973) | |
| 282-512, gnl|canFam2|chr8 (4899085-4899317) | |
| 282-512, gnl|danRer3|chr13 (34510797-34511015) | |
| 282-512, gnl|dasNov1|scaffold_7020 (493-725) | |
| 282-512, gnl|echTel1|scaffold_285863 (26732-26500) | |
| 282-512, gnl|fr1|chrUn (262959978-262959748) | |
| 282-512, gnl|galGal2|chr5 (41658978-41659210) | |
| 282-512, gnl|hg17|chr14 (92369217-92369449) | |
| 282-512, gnl|Hg17|chr14 (92369216-92369446) | |
| 282-512, gnl|mm7|chr12 (99987304-99987536) | |
| 282-512, gnl|Mm7|chr12 (99987303-99987533) | |
| 282-512, gnl|monDom2|scaffold_8 (30989877-30990106) | |
| 282-512, gnl|oryCun1|scaffold_178453 (81690-81915) | |
| 282-512, gnl|panTro1|chr15 (92772678-92772910) | |
| 282-512, gnl|rheMac2|chr7 (156035328-156035560) | |
| 282-512, gnl|rn3|chr6 (126763550-126763782) | |
| 282-512, gnl|tetNig1|chr10 (11514715-11514919) | |
| 282-512, gnl|xenTro1|scaffold_22 (3072666-3072898) | |
| 681-1149, gnl|bosTau2|chr21 (36178217-36177747) | |
| 681-1149, gnl|canFam2|chr8 (4905204-4904821) | |
| 681-1149, gnl|echTel1|scaffold_285863 (20289-20639) | |
| 681-1149, gnl|Hg17|chr14 (92375463-92375926) | |
| 681-1149, gnl|hg17|chr5 (39204683-39205066) | |
| 681-1149, gnl|mm7|chr12 (99993200-99992824) | |
| 681-1149, gnl|Mm7|chr12 (99992740-99993201) | |
| 681-1149, gnl|monDom2|scaffold_8 (30995320-30994881) | |
| 681-1149, gnl|oryCun1|scaffold_178453 (82525-82146) | |
| 681-1149, gnl|panTro1|chr4 (77519931-77519551) | |
| 681-1149, gnl|rheMac2|chr6 (38992392-38992775) | |
| 681-1149, gnl|rn3|chr6 (126769622-126769263) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| clu (2.39292) | |
| sin (0.349895) | |
| fce (0.271592) | |
| pan (0.23596) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| liv (0.146284) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (2.39292) | |
| sin (0.349895) | |
| fce (0.271592) | |
| pan (0.23596) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| liv (0.146284) | |
| spl (0.143184) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| thg (0.126791) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) |