Ss1.1-rpigca0_016862.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAGGAAGTTCAAGGTCTGAGGAAGTGTCCTGCCTACGCTGTGGGCTGCAGGAGGCTGA GGGCACAGGAAGAAGCCACACAGCCACCCCTCTGCTACAGCCAGGATGGGTCTGAGGGTG GCTCAGACAGGTTTTGTGGCCCTGGTGCTACTCCAGAGCTGTGCTGCCTACAAGCTGGTT TGCTACTATACCAGCTGGTCTCAGTACCGGGAGGGTGATGGGAGCTGCTTCCCAGATGCC ATCGACCCCTTCCTCTGCACCCACATCATCTACAGCTTTGCCAACATAAGCAACAATGAG ATTGACACCTTGGAGTGGAATGATGTGACGCTCTATGACACACTGAACACACTCAAGAAC AGGAACCCCAACCTGAAGACCCTCCTGTCTGTTGGAGGATGGAACTTTGGTTCTCAAAGA TTTTCCAAAATAGCCTCCAACACTCAGAGTCGCAGGACTTTCATCAAGTCGGTGCCACCA TTCCTGCGGACCCATGGCTTTGATGGACTGGACCTAGCCTGGATCTTCCCTGGGCGGAGA GACAAGCGGCATCTCACCACTCTAGTCAAGGAAATGAAGGCTGAATTTGTAAGGGAAGCC CTGCCTGGAACAGAGCGGCTCCTGCTCAGCGGAGCGGTGTCTGCAGGGAAGGTCGCCATT GACAGAGGCTATGACATCGCCCAGATATCTCAACACCTGGACTTCATCAGCCTTTTGACC TATGACTTCCACGGTGCCTGGCGCCAAACTACAGGACATCACAGTCCCCTGTTCCGAGGC CAGGGGGATGCAAGTTCCGACAGATTCAGCAATGCAGACTATGCTGTGAGCTATGTGCTG AGGCTGGGGGCCCCAGCCAATAAGCTGGTGATGGGTATCCCCACTTTTGGGAGGAGCTTC ACTTTGGCCTCTTCCAAGACAGACGTGGGAGCCCCCGCATCAGGGCCAGGAATACCAGGC CGGTTCACCAAGGAGAAAGGGATCCTTGCCTACTATGAGATCTGTGACTTCCTCCAAGGA GCCACAGTCCGTAGACCCCTTGGCCAGCAGGTCCCCTATGCCACCAAGGGCAACCAGTGG GTGGGGTATGATGACCAGGAGAGCGTCAAAAACAAGGCAAAGTACCTGAAGAGCAGGCAG CTGGCTGGTGCTATGGTGTGGACCCTGGACTTGGATGACTTTCGGGGCAACTTCTGTGGG CAGAACCTACGCTTCCCTCTCACCAGTGCCATCAAGGATGTGCTTGCTGCGGCGTAGCCT CTGTCCTTGGCACATGGCGGGGCAGGGATGGCCCTTGCCCCTTGGCTCTCACTGGCTAGG AGTCGGAGTACCTGCCCTGATGGGTCCCTTGCTGAGCCTCAGGCTCCCTCCCTGGGGCCC ATGCAGAGGCCACAGCTCTACCACCTGAGAGCAGCTCTAGTGGACAGGCAGGCAGGAGTG GTGCTGCAGGACCGGCACCATGTAAGACACGGGTCAGCACACACCTGCTGACTAGTGAGA ATGCCCAGGGACTCCAGGCTCCCCCCTCCAAGGAGATTTCTTCATCTCCCTTGCCCCCAG TCCTCCGTGCTAGGGGGCACCATTTTGGCAAGCTCCACCACCACACAGCCAACCATCTCA CAAGAAGCAGCAGCCACACTAATTATATCCTCTGCAAAGCCTGACTTGAAACTTTCACCC AGAAACATACTCATGGCCCCCTCCCACTTCCTTTCCTAATTCTGCAGCTGCTCAATAAAG CACCAGCGCTCATCAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAGGAAGTTCAAGGTCTGAGGAAGTGTCCTGCCTACGCTGTGGGCTGCAGGAGGCTGA GGGCACAGGAAGAAGCCACACAGCCACCCCTCTGCTACAGCCAGGATGGGTCTGAGGGTG GCTCAGACAGGTTTTGTGGCCCTGGTGCTACTCCAGAGCTGTGCTGCCTACAAGCTGGTT TGCTACTATACCAGCTGGTCTCAGTACCGGGAGGGTGATGGGAGCTGCTTCCCAGATGCC ATCGACCCCTTCCTCTGCACCCACATCATCTACAGCTTTGCCAACATAAGCAACAATGAG ATTGACACCTTGGAGTGGAATGATGTGACGCTCTATGACACACTGAACACACTCAAGAAC AGGAACCCCAACCTGAAGACCCTCCTGTCTGTTGGAGGATGGAACTTTGGTTCTCAAAGA TTTTCCAAAATAGCCTCCAACACTCAGAGTCGCAGGACTTTCATCAAGTCGGTGCCACCA TTCCTGCGGACCCATGGCTTTGATGGACTGGACCTAGCCTGGATCTTCCCTGGGCGGAGA GACAAGCGGCATCTCACCACTCTAGTCAAGGAAATGAAGGCTGAATTTGTAAGGGAAGCC CTGCCTGGAACAGAGCGGCTCCTGCTCAGCGGAGCGGTGTCTGCAGGGAAGGTCGCCATT GACAGAGGCTATGACATCGCCCAGATATCTCAACACCTGGACTTCATCAGCCTTTTGACC TATGACTTCCACGGTGCCTGGCGCCAAACTACAGGACATCACAGTCCCCTGTTCCGAGGC CAGGGGGATGCAAGTTCCGACAGATTCAGCAATGCAGACTATGCTGTGAGCTATGTGCTG AGGCTGGGGGCCCCAGCCAATAAGCTGGTGATGGGTATCCCCACTTTTGGGAGGAGCTTC ACTTTGGCCTCTTCCAAGACAGACGTGGGAGCCCCCGCATCAGGGCCAGGAATACCAGGC CGGTTCACCAAGGAGAAAGGGATCCTTGCCTACTATGAGATCTGTGACTTCCTCCAAGGA GCCACAGTCCGTAGACCCCTTGGCCAGCAGGTCCCCTATGCCACCAAGGGCAACCAGTGG GTGGGGTATGATGACCAGGAGAGCGTCAAAAACAAGGCAAAGTACCTGAAGAGCAGGCAG CTGGCTGGTGCTATGGTGTGGACCCTGGACTTGGATGACTTTCGGGGCAACTTCTGTGGG CAGAACCTACGCTTCCCTCTCACCAGTGCCATCAAGGATGTGCTTGCTGCGGCGTAGCCT CTGTCCTTGGCACATGGCGGGGCAGGGATGGCCCTTGCCCCTTGGCTCTCACTGGCTAGG AGTCGGAGTACCTGCCCTGATGGGTCCCTTGCTGAGCCTCAGGCTCCCTCCCTGGGGCCC ATGCAGAGGCCACAGCTCTACCACCTGAGAGCAGCTCTAGTGGACAGGCAGGCAGGAGTG GTGCTGCAGGACCGGCACCATGTAAGACACGGGTCAGCACACACCTGCTGACTAGTGAGA ATGCCCAGGGACTCCAGGCTCCCCCCTCCAAGGAGATTTCTTCATCTCCCTTGCCCCCAG TCCTCCGTGCTAGGGGGCACCATTTTGGCAAGCTCCACCACCACACAGCCAACCATCTCA CAAGAAGCAGCAGCCACACTAATTATATCCTCTGCAAAGCCTGACTTGAAACTTTCACCC AGAAACATACTCATGGCCCCCTCCCACTTCCTTTCCTAATTCTGCAGCTGCTCAATAAAG CACCAGCGCTCATCAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 200-1610, + strand, RNAz p=0.872106 | |
| 817-975, + strand, RNAz p=0.888731 | |
| 817-975, - strand, RNAz p=0.888731 | |
| 817-1004, + strand, RNAz p=0.951203 | |
| 817-1004, - strand, RNAz p=0.951203 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 200-1610, + strand, RNAz p=0.872106 | |
| 817-975, + strand, RNAz p=0.888731 | |
| 817-975, - strand, RNAz p=0.888731 | |
| 817-1004, + strand, RNAz p=0.951203 | |
| 817-1004, - strand, RNAz p=0.951203 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr16 (2354323-2354191) | |
| 1-132, gnl|canFam2|chr7 (3026263-3025960) | |
| 1-132, gnl|echTel1|scaffold_238178 (984-728) | |
| 1-132, gnl|hg17|chr1 (199887373-199887661) | |
| 1-132, gnl|Hg17|chr1 (199887515-199887382) | |
| 1-132, gnl|loxAfr1|scaffold_28723 (41703-41967) | |
| 1-132, gnl|mm7|chr1 (134072350-134072094) | |
| 1-132, gnl|Mm7|chr1 (134072223-134072339) | |
| 1-132, gnl|panTro1|chr1 (182742148-182742436) | |
| 1-132, gnl|rheMac2|chr1 (167247862-167247574) | |
| 1-132, gnl|rn3|chr13 (47154104-47153815) | |
| 161-363, gnl|bosTau2|chr16 (2353037-2352835) | |
| 161-363, gnl|Hg17|chr1 (199886170-199885968) | |
| 161-363, gnl|Mm7|chr1 (134073282-134073487) | |
| 406-571, gnl|bosTau2|chr16 (2351502-2351340) | |
| 406-571, gnl|Hg17|chr1 (199884587-199884425) | |
| 406-571, gnl|Mm7|chr1 (134074924-134075085) | |
| 693-815, gnl|bosTau2|chr16 (2346509-2346387) | |
| 693-815, gnl|Hg17|chr1 (199882070-199881948) | |
| 693-815, gnl|Mm7|chr1 (134077655-134077777) | |
| 817-1004, gnl|bosTau2|chr16 (2345822-2345635) | |
| 817-1004, gnl|canFam2|chr7 (3031827-3031609) | |
| 817-1004, gnl|danRer3|chrNA (152001934-152001737) | |
| 817-1004, gnl|dasNov1|scaffold_58777 (8147-7914) | |
| 817-1004, gnl|echTel1|scaffold_205061 (7873-7665) | |
| 817-1004, gnl|fr1|chrUn (172462466-172462236) | |
| 817-1004, gnl|hg17|chr1 (199881246-199881474) | |
| 817-1004, gnl|Hg17|chr1 (199881437-199881248) | |
| 817-1004, gnl|loxAfr1|scaffold_47584 (20475-20709) | |
| 817-1004, gnl|mm7|chr1 (134078473-134078249) | |
| 817-1004, gnl|Mm7|chr1 (134078280-134078465) | |
| 817-1004, gnl|monDom2|scaffold_13 (3219764-3219986) | |
| 817-1004, gnl|oryCun1|scaffold_201653 (97553-97756) | |
| 817-1004, gnl|panTro1|chr1 (182735867-182736095) | |
| 817-1004, gnl|rheMac2|chr1 (167253993-167253765) | |
| 817-1004, gnl|rn3|chr13 (47160274-47160049) | |
| 817-1004, gnl|tetNig1|chrUn_random (126516295-126516481) | |
| 1112-1752, gnl|bosTau2|chr16 (2344852-2344221) | |
| 1112-1752, gnl|Hg17|chr1 (199880375-199879722) | |
| 1112-1752, gnl|Mm7|chr1 (134079261-134079815) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr16 (2354323-2354191) | |
| 1-132, gnl|canFam2|chr7 (3026263-3025960) | |
| 1-132, gnl|echTel1|scaffold_238178 (984-728) | |
| 1-132, gnl|hg17|chr1 (199887373-199887661) | |
| 1-132, gnl|Hg17|chr1 (199887515-199887382) | |
| 1-132, gnl|loxAfr1|scaffold_28723 (41703-41967) | |
| 1-132, gnl|mm7|chr1 (134072350-134072094) | |
| 1-132, gnl|Mm7|chr1 (134072223-134072339) | |
| 1-132, gnl|panTro1|chr1 (182742148-182742436) | |
| 1-132, gnl|rheMac2|chr1 (167247862-167247574) | |
| 1-132, gnl|rn3|chr13 (47154104-47153815) | |
| 161-363, gnl|bosTau2|chr16 (2353037-2352835) | |
| 161-363, gnl|Hg17|chr1 (199886170-199885968) | |
| 161-363, gnl|Mm7|chr1 (134073282-134073487) | |
| 406-571, gnl|bosTau2|chr16 (2351502-2351340) | |
| 406-571, gnl|Hg17|chr1 (199884587-199884425) | |
| 406-571, gnl|Mm7|chr1 (134074924-134075085) | |
| 693-815, gnl|bosTau2|chr16 (2346509-2346387) | |
| 693-815, gnl|Hg17|chr1 (199882070-199881948) | |
| 693-815, gnl|Mm7|chr1 (134077655-134077777) | |
| 817-1004, gnl|bosTau2|chr16 (2345822-2345635) | |
| 817-1004, gnl|canFam2|chr7 (3031827-3031609) | |
| 817-1004, gnl|danRer3|chrNA (152001934-152001737) | |
| 817-1004, gnl|dasNov1|scaffold_58777 (8147-7914) | |
| 817-1004, gnl|echTel1|scaffold_205061 (7873-7665) | |
| 817-1004, gnl|fr1|chrUn (172462466-172462236) | |
| 817-1004, gnl|hg17|chr1 (199881246-199881474) | |
| 817-1004, gnl|Hg17|chr1 (199881437-199881248) | |
| 817-1004, gnl|loxAfr1|scaffold_47584 (20475-20709) | |
| 817-1004, gnl|mm7|chr1 (134078473-134078249) | |
| 817-1004, gnl|Mm7|chr1 (134078280-134078465) | |
| 817-1004, gnl|monDom2|scaffold_13 (3219764-3219986) | |
| 817-1004, gnl|oryCun1|scaffold_201653 (97553-97756) | |
| 817-1004, gnl|panTro1|chr1 (182735867-182736095) | |
| 817-1004, gnl|rheMac2|chr1 (167253993-167253765) | |
| 817-1004, gnl|rn3|chr13 (47160274-47160049) | |
| 817-1004, gnl|tetNig1|chrUn_random (126516295-126516481) | |
| 1112-1752, gnl|bosTau2|chr16 (2344852-2344221) | |
| 1112-1752, gnl|Hg17|chr1 (199880375-199879722) | |
| 1112-1752, gnl|Mm7|chr1 (134079261-134079815) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| clu (6.81981) | |
| nlu (2.10849) | |
| cga (0.279096) | |
| csp (0.161186) | |
| pla (0.133672) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (6.81981) | |
| nlu (2.10849) | |
| cga (0.279096) | |
| csp (0.161186) | |
| pla (0.133672) |