Non-Coding RNA Search

Ss1.1-rpigca_0228.5

Sequence:


               
               CGGGCTGCAGGATCGGCAGAGGATGCCCTGAACCAAGAGTGAAACTGAACTATCTAAGGA
AAACACTGTGAGCAAACACCAAGGGCTGAGGGAAACCATCTGATCAGAGCAGCTTCGCAG
CAGGACGAAGGCGGCAGCTGGGCGGAAGGACCAGGGCCGAGGCCATGTCCACCACCACAT
GCCAAGTGGTGGGCTTCCTGCTGTCCGTCCTGGGCCTGGCGGGCTGCATCGCTGCCACCG
GTATGGACATGTGGAGCACCCAGGACCTGTACGACAACCCGGTCACCTCCGTGTTCCAGT
ACGAGGGGCTCTGGCGGAGCTGTGTGCAGCAGAGCTCGGGCTTCACCGAGTGCCGGCCCT
ACTTCACCATCCTGGGCCTGCCAGCCATGCTGCAGGCAGTACGAGCCCTGATGATCGTGG
GCATAGTCCTGGGTGTCATCGGCCTCCTGGTGGCCATCTTCGCCCTGAAATGTATCCGCA
TTGGCAACATGGACGACCCCTCCAAAGCCAAGATGACACTGACCTCGGGGATCATGTTCA
TCATCTCAGGTCTTTGCACAATCGCTGGAGTGTCTGTATTTGCCAACATGCTGGTTACTA
ACTTCTGGATGTCTACAGCTAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTGCAGGATCGGCAGAGGATGCCCTGAACCAAGAGTGAAACTGAACTATCTAAGGA
AAACACTGTGAGCAAACACCAAGGGCTGAGGGAAACCATCTGATCAGAGCAGCTTCGCAG
CAGGACGAAGGCGGCAGCTGGGCGGAAGGACCAGGGCCGAGGCCATGTCCACCACCACAT
GCCAAGTGGTGGGCTTCCTGCTGTCCGTCCTGGGCCTGGCGGGCTGCATCGCTGCCACCG
GTATGGACATGTGGAGCACCCAGGACCTGTACGACAACCCGGTCACCTCCGTGTTCCAGT
ACGAGGGGCTCTGGCGGAGCTGTGTGCAGCAGAGCTCGGGCTTCACCGAGTGCCGGCCCT
ACTTCACCATCCTGGGCCTGCCAGCCATGCTGCAGGCAGTACGAGCCCTGATGATCGTGG
GCATAGTCCTGGGTGTCATCGGCCTCCTGGTGGCCATCTTCGCCCTGAAATGTATCCGCA
TTGGCAACATGGACGACCCCTCCAAAGCCAAGATGACACTGACCTCGGGGATCATGTTCA
TCATCTCAGGTCTTTGCACAATCGCTGGAGTGTCTGTATTTGCCAACATGCTGGTTACTA
ACTTCTGGATGTCTACAGCTAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16224163|gb|AAL15635.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16224163|gb|AAL15635.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               151-269, + strand, RNAz p=0.808918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-269, + strand, RNAz p=0.808918

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016369, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016369, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-384, gnl|bosTau2|chr1 (82461996-82461630)
               

               
               26-384, gnl|Hg17|chr3 (139211593-139211985)
               

               
               26-384, gnl|Mm7|chr9 (99353111-99352723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-384, gnl|bosTau2|chr1 (82461996-82461630)
               

               
               26-384, gnl|Hg17|chr3 (139211593-139211985)
               

               
               26-384, gnl|Mm7|chr9 (99353111-99352723)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.383362)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               clu (0.119646)

	26-384, gnl\|bosTau2\|chr1 (82461996-82461630)
	26-384, gnl\|Hg17\|chr3 (139211593-139211985)
	26-384, gnl\|Mm7\|chr9 (99353111-99352723)