Non-Coding RNA Search

Ss1.1-rpigca_0252.5

Sequence:


               
               TCGATCCCTCTGCATTCATTGTATACCTGACTTATGGTAAAGACTAAGAAAGAAATTATA
TGTCATACTACAGAAATCAATAAGGTTGAAAAGAATATCTGGGGTGGGAAATTATCAGGG
TAAAAATTAAAAAGGTTTGACAGTGGGGGCAGCATTGTCAGAACATTAAGGACAAGCCAG
GGATAGGATGGGAAGAGGACAGTCCTTTTCTATACCTCCCAGGCAGCCTCCGTCATCCCC
AAGGAAATCCACCTTATATCCACCACCCCCTCTTTTGCCACCTAGTTCTGCAAACTTCCC
CCCTTTCTGGGCACCTAGAGTCTCCCTCTGCTGCCTTCTTTCCTGGGATACAGGCATACC
TCATGCTTCTCCTACCTTTGTAGACTCTTTCGCGAGGCCCTGGCTTTCCTCACCTAACTT
AATTATTCTGCTTGTAGTTTACCATTCTATTCTGGAAAGTGGGAGTCCCATTCAGGGGTG
CATTTATTATGAAACTAATGAATTTTAAGCTCCAATGTTCCTTGCTTACTACAGGCTTCT
TGTACTCGAATAATGTAGAGGGTCCTAATAATGTGTTTCACATGGTCATAGGTTGTAAAA
ATTGCAAAAGTAAGATTTTAATAGTAATAGTTTAAAACCAATTGCACTGGTATTTTTTTC
TCTTAAAGAGTTTACCCCCCCCCCAATTTTATAATATTTAGGCTCCACAAAACCGGGATC
TGCCCATGTCTTAGCTGTTGGCACTCCTGTCCCAAATTCTGTTTTCCTATGAAAAATAAA
AGAAGAAAACCAACAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGATCCCTCTGCATTCATTGTATACCTGACTTATGGTAAAGACTAAGAAAGAAATTATA
TGTCATACTACAGAAATCAATAAGGTTGAAAAGAATATCTGGGGTGGGAAATTATCAGGG
TAAAAATTAAAAAGGTTTGACAGTGGGGGCAGCATTGTCAGAACATTAAGGACAAGCCAG
GGATAGGATGGGAAGAGGACAGTCCTTTTCTATACCTCCCAGGCAGCCTCCGTCATCCCC
AAGGAAATCCACCTTATATCCACCACCCCCTCTTTTGCCACCTAGTTCTGCAAACTTCCC
CCCTTTCTGGGCACCTAGAGTCTCCCTCTGCTGCCTTCTTTCCTGGGATACAGGCATACC
TCATGCTTCTCCTACCTTTGTAGACTCTTTCGCGAGGCCCTGGCTTTCCTCACCTAACTT
AATTATTCTGCTTGTAGTTTACCATTCTATTCTGGAAAGTGGGAGTCCCATTCAGGGGTG
CATTTATTATGAAACTAATGAATTTTAAGCTCCAATGTTCCTTGCTTACTACAGGCTTCT
TGTACTCGAATAATGTAGAGGGTCCTAATAATGTGTTTCACATGGTCATAGGTTGTAAAA
ATTGCAAAAGTAAGATTTTAATAGTAATAGTTTAAAACCAATTGCACTGGTATTTTTTTC
TCTTAAAGAGTTTACCCCCCCCCCAATTTTATAATATTTAGGCTCCACAAAACCGGGATC
TGCCCATGTCTTAGCTGTTGGCACTCCTGTCCCAAATTCTGTTTTCCTATGAAAAATAAA
AGAAGAAAACCAACAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               121-378, + strand, RNAz p=0.989249

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-378, + strand, RNAz p=0.989249

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-797, gnl|bosTau2|chr23 (24059160-24059962)
               

               
               3-797, gnl|Hg17|chr6 (29705840-29705048)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-797, gnl|bosTau2|chr23 (24059160-24059962)
               

               
               3-797, gnl|Hg17|chr6 (29705840-29705048)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eye (0.170503)
               

               
               liv (0.146284)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

	3-797, gnl\|bosTau2\|chr23 (24059160-24059962)
	3-797, gnl\|Hg17\|chr6 (29705840-29705048)