Non-Coding RNA Search

Ss1.1-rpigca_0387.5

Sequence:


               
               GACGAGGAGGAAGACATCAGCGAAGAGTCACCTGCAGAGCACCCTTCCGTCTTTTCCTGT
TTACCTGCATCTCTTGAGTGCCTAGCTGACCCAAGTGATTCCTGCTTCCTCCAGTTTGAG
TCCTGTCCCATGGAAGAGAGCTGGTTTATCACCCCTCCCCCGTGTTTTACTGCAGGTGGC
TTAACCACTATCAAGGTGGAAACCAGTCCTATGGAAAACCTTCTCATCGAACATCCCAGC
ATGTCTGTCTACGCCGTGCACAACTCCTGCCCCAACCTCAGCGAGGCCCACTGTGGGACT
GAGGAATTTCATAACCCAGGTAGTCCCAGAGTGGAAGCTCAAAATGAAGTGCAACAGCAC
ATTCACTGCTACGTTGCAGCTCTTGCTGCTCATACAGCTTTTCTGGAACAACCCAAGAGC
TTGCGCCCTTCCCAGTGGATAAAAGAACACAGTGAAAGACAGTCTCTGAACAGAAATAGC
CTTCGTCGCCAAAATCTTACCAGGGATTGCCATTCCCGGCAAGTAAAGCACAACGGCTGG
GCTGTCCATCAGCCCTGCCCACGTCAGTACAATTACTAAGAATTTCAAGTGTGGTTGGTT
CCTTTCTCTTGGTTTGTGCCGATGTGTGTGGATGTGTGTGGATGGGCGATGGCGACGCTG
TCTCTTTACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGAGGAGGAAGACATCAGCGAAGAGTCACCTGCAGAGCACCCTTCCGTCTTTTCCTGT
TTACCTGCATCTCTTGAGTGCCTAGCTGACCCAAGTGATTCCTGCTTCCTCCAGTTTGAG
TCCTGTCCCATGGAAGAGAGCTGGTTTATCACCCCTCCCCCGTGTTTTACTGCAGGTGGC
TTAACCACTATCAAGGTGGAAACCAGTCCTATGGAAAACCTTCTCATCGAACATCCCAGC
ATGTCTGTCTACGCCGTGCACAACTCCTGCCCCAACCTCAGCGAGGCCCACTGTGGGACT
GAGGAATTTCATAACCCAGGTAGTCCCAGAGTGGAAGCTCAAAATGAAGTGCAACAGCAC
ATTCACTGCTACGTTGCAGCTCTTGCTGCTCATACAGCTTTTCTGGAACAACCCAAGAGC
TTGCGCCCTTCCCAGTGGATAAAAGAACACAGTGAAAGACAGTCTCTGAACAGAAATAGC
CTTCGTCGCCAAAATCTTACCAGGGATTGCCATTCCCGGCAAGTAAAGCACAACGGCTGG
GCTGTCCATCAGCCCTGCCCACGTCAGTACAATTACTAAGAATTTCAAGTGTGGTTGGTT
CCTTTCTCTTGGTTTGTGCCGATGTGTGTGGATGTGTGTGGATGGGCGATGGCGACGCTG
TCTCTTTACAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15637413|gb|AAL04514.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15637413|gb|AAL04514.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.744629
               

               
               334-651, + strand, RNAz p=0.840164

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.744629
               

               
               334-651, + strand, RNAz p=0.840164

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF409114, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF409114, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-329, gnl|bosTau2|chr14 (42884098-42883770)
               

               
               1-329, gnl|Hg17|chr8 (96021592-96021264)
               

               
               1-329, gnl|Mm7|chr4 (11092269-11092594)
               


               
               334-672, gnl|bosTau2|chr14 (42880046-42879708)
               

               
               334-672, gnl|Hg17|chr8 (96012128-96011790)
               

               
               334-672, gnl|Mm7|chr4 (11096861-11097197)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-329, gnl|bosTau2|chr14 (42884098-42883770)
               

               
               1-329, gnl|Hg17|chr8 (96021592-96021264)
               

               
               1-329, gnl|Mm7|chr4 (11092269-11092594)
               


               
               334-672, gnl|bosTau2|chr14 (42880046-42879708)
               

               
               334-672, gnl|Hg17|chr8 (96012128-96011790)
               

               
               334-672, gnl|Mm7|chr4 (11096861-11097197)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               spl (0.286369)
               

               
               gul (0.177588)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               gul (0.177588)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	80-199, - strand, RNAz p=0.744629
	334-651, + strand, RNAz p=0.840164

	1-329, gnl\|bosTau2\|chr14 (42884098-42883770)
	1-329, gnl\|Hg17\|chr8 (96021592-96021264)
	1-329, gnl\|Mm7\|chr4 (11092269-11092594)

	334-672, gnl\|bosTau2\|chr14 (42880046-42879708)
	334-672, gnl\|Hg17\|chr8 (96012128-96011790)
	334-672, gnl\|Mm7\|chr4 (11096861-11097197)

	spl (0.286369)
	gul (0.177588)
	clu (0.119646)
	ecc (0.115035)
	jca (0.11396)