Ss1.1-rpigca_0626.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGGCGGAGCTTGTTAGAGTCGCGGCAGAGCAGAGTCGGGGCTGGAGCGCACTATGCT GTCGCCCGAAGCGGAGCGGGTGCTGCGGTACCTGGTGGAGGTGGAGGAGCTCGCCGAAGA GGTTCTGGCGGACAAACGGCAGATTGTGGACCTGGACACCAAAAGGAATCGGAACCGGGA GGGCCTGAGAGCCCTGCAGAAGGATCTCAGCCTCTCTGAAGATGTGATGGTTTGCTTCGG GAACATGTTTATCAAGATGCCTCACCCAGAGACGAAAGAAATGATTGAGAAAGATCAGGA CCATCTGAATAAAGAAATAGAGAGACTCCGGAAACAACTTAAAGTGAAGGTCAACCGCCT CTTTGAAGCCCAAGGCAAACCGGAGCTGAAGGGTTTTAACCTGAGCCCCCTCAACCAGGA TGAGCTTAAAGCTCTCAAGATCATCTTGAAAGGATGAAACTTAAGAACCAAGATGGGGGA CCTAAGACCAGCCTGCCCCCCACTCCCCACCCTGGGATGGTGGAAGACCCAGGACTCTCC AGCTTTGAAACCTGCAAGTCCAGGATCTGCCCTGCAAGGGGACAGGTGTGAATCTGGCCA TAGCCCCCGTACGAAGCTTCTTTGTCTGTAGCACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGGCGGAGCTTGTTAGAGTCGCGGCAGAGCAGAGTCGGGGCTGGAGCGCACTATGCT GTCGCCCGAAGCGGAGCGGGTGCTGCGGTACCTGGTGGAGGTGGAGGAGCTCGCCGAAGA GGTTCTGGCGGACAAACGGCAGATTGTGGACCTGGACACCAAAAGGAATCGGAACCGGGA GGGCCTGAGAGCCCTGCAGAAGGATCTCAGCCTCTCTGAAGATGTGATGGTTTGCTTCGG GAACATGTTTATCAAGATGCCTCACCCAGAGACGAAAGAAATGATTGAGAAAGATCAGGA CCATCTGAATAAAGAAATAGAGAGACTCCGGAAACAACTTAAAGTGAAGGTCAACCGCCT CTTTGAAGCCCAAGGCAAACCGGAGCTGAAGGGTTTTAACCTGAGCCCCCTCAACCAGGA TGAGCTTAAAGCTCTCAAGATCATCTTGAAAGGATGAAACTTAAGAACCAAGATGGGGGA CCTAAGACCAGCCTGCCCCCCACTCCCCACCCTGGGATGGTGGAAGACCCAGGACTCTCC AGCTTTGAAACCTGCAAGTCCAGGATCTGCCCTGCAAGGGGACAGGTGTGAATCTGGCCA TAGCCCCCGTACGAAGCTTCTTTGTCTGTAGCACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 369-601, - strand, RNAz p=0.998493 | |
| 369-534, - strand, RNAz p=0.706146 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 369-601, - strand, RNAz p=0.998493 | |
| 369-534, - strand, RNAz p=0.706146 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_030815, - |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 9-154, gnl|bosTau2|chr13 (42697569-42697714) | |
| 9-154, gnl|canFam2|chr24 (24356667-24356570) | |
| 9-154, gnl|dasNov1|scaffold_84250 (38318-38416) | |
| 9-154, gnl|echTel1|scaffold_289637 (42682-42581) | |
| 9-154, gnl|hg17|chr12 (84464098-84464208) | |
| 9-154, gnl|Hg17|chr20 (30003459-30003327) | |
| 9-154, gnl|loxAfr1|scaffold_50997 (8868-8770) | |
| 9-154, gnl|mm7|chr2 (152756193-152756095) | |
| 9-154, gnl|Mm7|chr2 (152756215-152756079) | |
| 9-154, gnl|oryCun1|scaffold_215145 (48265-48154) | |
| 9-154, gnl|panTro1|chr10 (86548196-86548306) | |
| 9-154, gnl|rheMac2|chr11 (82578805-82578915) | |
| 9-154, gnl|rn3|chr3 (143264820-143264730) | |
| 369-636, gnl|bosTau2|chr13 (42703166-42703423) | |
| 369-636, gnl|canFam2|chr24 (24351031-24351498) | |
| 369-636, gnl|dasNov1|scaffold_33687 (41529-41986) | |
| 369-636, gnl|echTel1|scaffold_178551 (1319-1580) | |
| 369-636, gnl|hg17|chr20 (29996807-29997268) | |
| 369-636, gnl|Hg17|chr20 (29997359-29997123) | |
| 369-636, gnl|loxAfr1|scaffold_50997 (2196-2657) | |
| 369-636, gnl|mm7|chr2 (152750083-152750508) | |
| 369-636, gnl|Mm7|chr2 (152750603-152750375) | |
| 369-636, gnl|monDom2|scaffold_38 (1122845-1122296) | |
| 369-636, gnl|oryCun1|scaffold_215145 (47450-47860) | |
| 369-636, gnl|panTro1|chr21 (31697412-31697873) | |
| 369-636, gnl|rheMac2|chr10 (32627367-32626902) | |
| 369-636, gnl|rn3|chr3 (143259017-143259433) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-154, gnl|bosTau2|chr13 (42697569-42697714) | |
| 9-154, gnl|canFam2|chr24 (24356667-24356570) | |
| 9-154, gnl|dasNov1|scaffold_84250 (38318-38416) | |
| 9-154, gnl|echTel1|scaffold_289637 (42682-42581) | |
| 9-154, gnl|hg17|chr12 (84464098-84464208) | |
| 9-154, gnl|Hg17|chr20 (30003459-30003327) | |
| 9-154, gnl|loxAfr1|scaffold_50997 (8868-8770) | |
| 9-154, gnl|mm7|chr2 (152756193-152756095) | |
| 9-154, gnl|Mm7|chr2 (152756215-152756079) | |
| 9-154, gnl|oryCun1|scaffold_215145 (48265-48154) | |
| 9-154, gnl|panTro1|chr10 (86548196-86548306) | |
| 9-154, gnl|rheMac2|chr11 (82578805-82578915) | |
| 9-154, gnl|rn3|chr3 (143264820-143264730) | |
| 369-636, gnl|bosTau2|chr13 (42703166-42703423) | |
| 369-636, gnl|canFam2|chr24 (24351031-24351498) | |
| 369-636, gnl|dasNov1|scaffold_33687 (41529-41986) | |
| 369-636, gnl|echTel1|scaffold_178551 (1319-1580) | |
| 369-636, gnl|hg17|chr20 (29996807-29997268) | |
| 369-636, gnl|Hg17|chr20 (29997359-29997123) | |
| 369-636, gnl|loxAfr1|scaffold_50997 (2196-2657) | |
| 369-636, gnl|mm7|chr2 (152750083-152750508) | |
| 369-636, gnl|Mm7|chr2 (152750603-152750375) | |
| 369-636, gnl|monDom2|scaffold_38 (1122845-1122296) | |
| 369-636, gnl|oryCun1|scaffold_215145 (47450-47860) | |
| 369-636, gnl|panTro1|chr21 (31697412-31697873) | |
| 369-636, gnl|rheMac2|chr10 (32627367-32626902) | |
| 369-636, gnl|rn3|chr3 (143259017-143259433) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cty (0.31224) | |
| nmm (0.132802) | |
| clu (0.119646) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.31224) | |
| nmm (0.132802) | |
| clu (0.119646) | |
| jej (0.0989218) |