Non-Coding RNA Search

Ss1.1-rpigca_0854.5

Sequence:


               
               AGTATAGGGCAGTTTTTTGCTATTTTTTCTTTTAATCAACTGCACATGGGTGATTTCTTC
ATAAATTCAAGAGTTTTCTGTTTAATTTGGGATTATGACAGAGACAGGTACTCTAGCCAT
TTCAGATTAGTGTTCCCATTGCTCTCATCCTGTTTTTCATATCTGAATATGTCATGATTT
TGGAGTTTATTTTTAAAAGCAAACCAAAAAGATGCATACCAAGAGAAAGAGCATGAAATG
AAGCAATTGAAGTATTTTGACTTTTTTTTTCCCTGCAAAATGCTGAGTTAAGAAAGTTCA
TTACCAGCAGTTGAGAATAAATAGCGCCATTGATTTCGGCAAATGAATGAGAAGATCTAA
ATATTATCAGGTCTCTTGAAGTTAGTGTGATGATACAAGTTGAGATGTTTCTCTAGATAC
TGAGAGAAATGGTATAAATAGACCATCTATGCTTCTATAAAAAATGTTTTTTTATGATCA
ATAGACAGCATGATATTATTGTAAAACAGACTTTGGACTCATCCATATCTGACTTGGATT
TTACCTAGTTTGTTCATCAGCATTACGTTTGACATTGGACAAGTGTTATAACTTCTCAAA
GTCACACTTTTATCTTCAAAATGGGAGGAAGATCTGTTTGTTTGCTAATGGGGTAATGTT
TATGAAAATATCTGGCACCTGGGTGCTCGGTAAATACCAGTCCCCTCTTTCTTTCTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATAGGGCAGTTTTTTGCTATTTTTTCTTTTAATCAACTGCACATGGGTGATTTCTTC
ATAAATTCAAGAGTTTTCTGTTTAATTTGGGATTATGACAGAGACAGGTACTCTAGCCAT
TTCAGATTAGTGTTCCCATTGCTCTCATCCTGTTTTTCATATCTGAATATGTCATGATTT
TGGAGTTTATTTTTAAAAGCAAACCAAAAAGATGCATACCAAGAGAAAGAGCATGAAATG
AAGCAATTGAAGTATTTTGACTTTTTTTTTCCCTGCAAAATGCTGAGTTAAGAAAGTTCA
TTACCAGCAGTTGAGAATAAATAGCGCCATTGATTTCGGCAAATGAATGAGAAGATCTAA
ATATTATCAGGTCTCTTGAAGTTAGTGTGATGATACAAGTTGAGATGTTTCTCTAGATAC
TGAGAGAAATGGTATAAATAGACCATCTATGCTTCTATAAAAAATGTTTTTTTATGATCA
ATAGACAGCATGATATTATTGTAAAACAGACTTTGGACTCATCCATATCTGACTTGGATT
TTACCTAGTTTGTTCATCAGCATTACGTTTGACATTGGACAAGTGTTATAACTTCTCAAA
GTCACACTTTTATCTTCAAAATGGGAGGAAGATCTGTTTGTTTGCTAATGGGGTAATGTT
TATGAAAATATCTGGCACCTGGGTGCTCGGTAAATACCAGTCCCCTCTTTCTTTCTCCCC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-705, gnl|bosTau2|chr10 (19185023-19184325)
               

               
               5-705, gnl|Hg17|chr15 (32933939-32933231)
               

               
               5-705, gnl|Mm7|chr2 (113839516-113838775)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-705, gnl|bosTau2|chr10 (19185023-19184325)
               

               
               5-705, gnl|Hg17|chr15 (32933939-32933231)
               

               
               5-705, gnl|Mm7|chr2 (113839516-113838775)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	5-705, gnl\|bosTau2\|chr10 (19185023-19184325)
	5-705, gnl\|Hg17\|chr15 (32933939-32933231)
	5-705, gnl\|Mm7\|chr2 (113839516-113838775)