Non-Coding RNA Search

Ss1.1-rpigca_0944.5

Sequence:


               
               ATGGTTCAAAGCCTCTTGTATCTCATCTGTTCAGGCCAAGGTCAAGTCAGCCATCCCACC
AGTACTCATTGAGCCCCTCCTCTGTCCCCATTACCATTCTAGGGAGCAGCTAGATGAAAA
TCTTTACACTCATGGAGCTTCCATGCTAGGGAGCGGAGATGGACAATAAACAGACCAAAT
GCATCATACAGTAACACTGGATAAGGGCACGTGGGGAAACCAGCGGGGAGGGAGGATGAG
GTCCATGCTGTGCTGTGAACTTTAAGGTGTGGTCAGGAAAGGCCTCACTGCTAATGGAAT
TTCTATGGGCTAATTTTGGGATCTGTGTGCCTTGTGTGAGAATGTGTGCCCTGGCTCTCA
TTTGAGAGTAACCAGCAATAAATTTAGAACATACGAAATGCATGGGGTGGATTTTTTTTT
AAAAAGTACATGAAATAAAAATTTATAATAATTAAATCTACCATGATTATACCTAAGGTT
TTGGTGCCTTAAAAACATGAAAGCAGCCAAAGAGGGCCAAAAGAGAAAGGTAATAGCCAA
GCCCAAGGTTTACTGTCATTTCAAGTAGTAATTCTCTAATCTCTCAACTGCTGCTATTTT
CCTAACTGATATTCCAGAGATGATCAGAGCTCAATACCCTACCATCAGGAAACTGCAGAG
CCTTCAGATACAGCAGATTTGATAACCTCAGTGAAAAGCTTGAAATGTTCTCTGCCTAGA
ACTGGGCTCCAGATAATTACCATATGGCCTGGTCTGTTTTACTTTCTCTTCCAAATCAAA
ATGTCTTTCTAGGGTTCGGAACACTCCTGCATTCTGAGTCATGAGCAGAATCTTAAAACG
GTCTCACTCTGTCTGTGAAGATGATTTAAAAGACTTCCGACTATATTATTAGCCTTATTA
ATTTTAAAAAGAAATACATATTATCCATGTACAGAATGTCTAATCATGTTAATTGTGCAG
CTTTTAATTCATTTTTTCAGCTCAGTTTTTGAAAGGGCAGATTATTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTTCAAAGCCTCTTGTATCTCATCTGTTCAGGCCAAGGTCAAGTCAGCCATCCCACC
AGTACTCATTGAGCCCCTCCTCTGTCCCCATTACCATTCTAGGGAGCAGCTAGATGAAAA
TCTTTACACTCATGGAGCTTCCATGCTAGGGAGCGGAGATGGACAATAAACAGACCAAAT
GCATCATACAGTAACACTGGATAAGGGCACGTGGGGAAACCAGCGGGGAGGGAGGATGAG
GTCCATGCTGTGCTGTGAACTTTAAGGTGTGGTCAGGAAAGGCCTCACTGCTAATGGAAT
TTCTATGGGCTAATTTTGGGATCTGTGTGCCTTGTGTGAGAATGTGTGCCCTGGCTCTCA
TTTGAGAGTAACCAGCAATAAATTTAGAACATACGAAATGCATGGGGTGGATTTTTTTTT
AAAAAGTACATGAAATAAAAATTTATAATAATTAAATCTACCATGATTATACCTAAGGTT
TTGGTGCCTTAAAAACATGAAAGCAGCCAAAGAGGGCCAAAAGAGAAAGGTAATAGCCAA
GCCCAAGGTTTACTGTCATTTCAAGTAGTAATTCTCTAATCTCTCAACTGCTGCTATTTT
CCTAACTGATATTCCAGAGATGATCAGAGCTCAATACCCTACCATCAGGAAACTGCAGAG
CCTTCAGATACAGCAGATTTGATAACCTCAGTGAAAAGCTTGAAATGTTCTCTGCCTAGA
ACTGGGCTCCAGATAATTACCATATGGCCTGGTCTGTTTTACTTTCTCTTCCAAATCAAA
ATGTCTTTCTAGGGTTCGGAACACTCCTGCATTCTGAGTCATGAGCAGAATCTTAAAACG
GTCTCACTCTGTCTGTGAAGATGATTTAAAAGACTTCCGACTATATTATTAGCCTTATTA
ATTTTAAAAAGAAATACATATTATCCATGTACAGAATGTCTAATCATGTTAATTGTGCAG
CTTTTAATTCATTTTTTCAGCTCAGTTTTTGAAAGGGCAGATTATTGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               4-1008, gnl|bosTau2|chr2 (15401995-15401003)
               

               
               4-1008, gnl|Hg17|chr2 (173914184-173915165)
               

               
               4-1008, gnl|Mm7|chr2 (72248305-72249209)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1008, gnl|bosTau2|chr2 (15401995-15401003)
               

               
               4-1008, gnl|Hg17|chr2 (173914184-173915165)
               

               
               4-1008, gnl|Mm7|chr2 (72248305-72249209)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               mas (0.210305)
               

               
               ldo (0.194005)
               

               
               ssp (0.13552)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ldo (0.194005)
               

               
               ssp (0.13552)
               

               
               clu (0.119646)

	4-1008, gnl\|bosTau2\|chr2 (15401995-15401003)
	4-1008, gnl\|Hg17\|chr2 (173914184-173915165)
	4-1008, gnl\|Mm7\|chr2 (72248305-72249209)