Ss1.1-rpigca_1146.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGATCTCATCAGGCGCCTTATCTAAAACAGTACTCTCATTTTCTTAATTAGAAAAAGA TGAGTTATCTTCACTTCATGGATGAGCTTGGCTGACCCAGGTTCTGATTATACTTTCCAT TAGTAATGTTTCTGCAGGAGTGTTTAAGGAATATTGGTGTCATCAGACGGTCCCATATAA CCTCATATTAAAGGCAGTACGCCTCTCTGGATTTTCACCCTGGCATTTCTGGGAGGTCTC AGAGGCCGTCCCGGCGCCACCCTGCTCTGCCTTGGGGCTGTCCAGTAGCTCCCCTGAGGA AGGTGATGATACTGTTCCCAGCAGGGAGTCACTACCTCACTCCAGGGCTTTATTTGCTTT AAATAAAGCGCATTTTATTTTTTTCTAGTGAGAAGCTCTAGTATGATTGCTTTGCAGTAG GTCCAGAGCCTAATTTTTCAGCACTTTCCGGATCATTCTAATGTGTCACCGTTGCTTTAA GTGATTATCAAGAAGTGCAACTTACCTAAAATAGAAATTCAGTCCAATAAGTAAACACAG TTTTCTTTCCTTTGCTTGAATTCCTTTTCTTATTTTATTGAACTCTTTCTCTGTGGATTC TTTTTGCCCCAGGTTTTACACCCTGTTGGTGCTGGCCACAGCTCTCTTTGGACGGCCACC ATTCAAAAATGTGATTGTGAACGGACTTGTCCTGGCAAGTGATGGCCAAAAAATGAGCAA ACGAAAAAAGAATTATCCAGATCCACTTTCAATCATCCATAAATATGGTGCTGATGCCCT CAGGTTGTATCTGATTAATTCCCCTGTGGTGAGAGCTGAAAACCTCCGCTTTAAGGAGGA GGGTGTCCGAGATGTCCTGAAGGATGTACTGCTGCCTTGGTACAACGCCTATCGCTTCTT CATCCAGAATGTCCTGAGGCTACAGAAGGAGGAAGAAATGGAATTCCTTTACAATGAGAA CCTGGTTAAAGAAAGTGCCAACATCACAGACCGGTGGGTCCTGTCCTTTATGCAGTCGCT TATTGGGTTCTTTGAGACCGAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGATCTCATCAGGCGCCTTATCTAAAACAGTACTCTCATTTTCTTAATTAGAAAAAGA TGAGTTATCTTCACTTCATGGATGAGCTTGGCTGACCCAGGTTCTGATTATACTTTCCAT TAGTAATGTTTCTGCAGGAGTGTTTAAGGAATATTGGTGTCATCAGACGGTCCCATATAA CCTCATATTAAAGGCAGTACGCCTCTCTGGATTTTCACCCTGGCATTTCTGGGAGGTCTC AGAGGCCGTCCCGGCGCCACCCTGCTCTGCCTTGGGGCTGTCCAGTAGCTCCCCTGAGGA AGGTGATGATACTGTTCCCAGCAGGGAGTCACTACCTCACTCCAGGGCTTTATTTGCTTT AAATAAAGCGCATTTTATTTTTTTCTAGTGAGAAGCTCTAGTATGATTGCTTTGCAGTAG GTCCAGAGCCTAATTTTTCAGCACTTTCCGGATCATTCTAATGTGTCACCGTTGCTTTAA GTGATTATCAAGAAGTGCAACTTACCTAAAATAGAAATTCAGTCCAATAAGTAAACACAG TTTTCTTTCCTTTGCTTGAATTCCTTTTCTTATTTTATTGAACTCTTTCTCTGTGGATTC TTTTTGCCCCAGGTTTTACACCCTGTTGGTGCTGGCCACAGCTCTCTTTGGACGGCCACC ATTCAAAAATGTGATTGTGAACGGACTTGTCCTGGCAAGTGATGGCCAAAAAATGAGCAA ACGAAAAAAGAATTATCCAGATCCACTTTCAATCATCCATAAATATGGTGCTGATGCCCT CAGGTTGTATCTGATTAATTCCCCTGTGGTGAGAGCTGAAAACCTCCGCTTTAAGGAGGA GGGTGTCCGAGATGTCCTGAAGGATGTACTGCTGCCTTGGTACAACGCCTATCGCTTCTT CATCCAGAATGTCCTGAGGCTACAGAAGGAGGAAGAAATGGAATTCCTTTACAATGAGAA CCTGGTTAAAGAAAGTGCCAACATCACAGACCGGTGGGTCCTGTCCTTTATGCAGTCGCT TATTGGGTTCTTTGAGACCGAAAT |
| Aligned organism(s): 20 entry(ies) | More info |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
| 158-699, gnl|bosTau2|chr8 (46737949-46738501) | |
| 158-699, gnl|Hg17|chr9 (92105266-92104806) | |
| 781-929, gnl|bosTau2|chr8 (46741385-46741533) | |
| 781-929, gnl|canFam2|chr1 (102156131-102155959) | |
| 781-929, gnl|danRer3|chr25 (10185265-10185116) | |
| 781-929, gnl|echTel1|scaffold_309210 (3122-3294) | |
| 781-929, gnl|fr1|chrUn (31816637-31816807) | |
| 781-929, gnl|galGal2|chr12 (3620975-3620799) | |
| 781-929, gnl|hg17|chr9 (92100686-92100859) | |
| 781-929, gnl|Hg17|chr9 (92100838-92100690) | |
| 781-929, gnl|loxAfr1|scaffold_33660 (11028-10856) | |
| 781-929, gnl|mm7|chr13 (49199713-49199540) | |
| 781-929, gnl|Mm7|chr13 (49199559-49199707) | |
| 781-929, gnl|monDom2|scaffold_237 (489313-489491) | |
| 781-929, gnl|oryCun1|scaffold_183275 (70149-70322) | |
| 781-929, gnl|panTro1|chrUn_random (27655796-27655969) | |
| 781-929, gnl|rheMac2|chr15 (104161781-104161951) | |
| 781-929, gnl|rn3|chr17 (20915109-20915282) | |
| 781-929, gnl|tetNig1|chr11 (3624460-3624298) | |
| 781-929, gnl|xenTro1|scaffold_425 (219121-219288) |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-699, gnl|bosTau2|chr8 (46737949-46738501) | |
| 158-699, gnl|Hg17|chr9 (92105266-92104806) | |
| 781-929, gnl|bosTau2|chr8 (46741385-46741533) | |
| 781-929, gnl|canFam2|chr1 (102156131-102155959) | |
| 781-929, gnl|danRer3|chr25 (10185265-10185116) | |
| 781-929, gnl|echTel1|scaffold_309210 (3122-3294) | |
| 781-929, gnl|fr1|chrUn (31816637-31816807) | |
| 781-929, gnl|galGal2|chr12 (3620975-3620799) | |
| 781-929, gnl|hg17|chr9 (92100686-92100859) | |
| 781-929, gnl|Hg17|chr9 (92100838-92100690) | |
| 781-929, gnl|loxAfr1|scaffold_33660 (11028-10856) | |
| 781-929, gnl|mm7|chr13 (49199713-49199540) | |
| 781-929, gnl|Mm7|chr13 (49199559-49199707) | |
| 781-929, gnl|monDom2|scaffold_237 (489313-489491) | |
| 781-929, gnl|oryCun1|scaffold_183275 (70149-70322) | |
| 781-929, gnl|panTro1|chrUn_random (27655796-27655969) | |
| 781-929, gnl|rheMac2|chr15 (104161781-104161951) | |
| 781-929, gnl|rn3|chr17 (20915109-20915282) | |
| 781-929, gnl|tetNig1|chr11 (3624460-3624298) | |
| 781-929, gnl|xenTro1|scaffold_425 (219121-219288) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mga (0.160205) | |
| clu (0.119646) |