Ss1.1-rpigca_1188.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCGGGATGGAGGCTGAGCATTTGTTTTGCCTTTGAGTCTTGCCATTCCTCTGAAGAAC AGAAGACACTTATAAAACTCTACACTTTGCCTTGCACTCTATAAGCAAAATGGATATACA AAATCCCCCAACTTCCAAATGTATCACATACTGGAAGAGAAAAGTTAAATCTGAATACAT GCGACTTCGGCAGCTTAAACGGCTTCAGGCAAATATGGGTGCAAAGGCTCTATATGTAGC AAATTTTGCAAAAGTTCAAGAAAAAACCCAGATCCTCAATGAAGAATGGAAGAAGCTTCG TGTCCAACCTGTTCAGTTGATGAAGCCCGTGAGTGGGCATCCTTTTCTCAAAAAGTGTAC CATAGAGAGCATTTTCCCGGGATTTGCAAGCCAGCATATGTTAATGAGGTCTCTGAACAC AGTTGCATTGGTTCCCATCATGTATTCCTGGTCCCCTCTTCAGCAGAACTTTACGGTAGA AGATGAGACCGTTTTGTGCAATATTCCCTACATGGGCGATGAGGTGAAGGAAGAAGATGA GACTTTCATTGAGGAGCTGATCAATAACTACGATGGCAAAGTCCATGGTGAAGAAGAGAT GATTCCTGGCTCTGTGCTGATTAGTGATGCTGTTTTCCTGGAGTTGGTAGATGCTCTGAA TCAATACTCGGATGAGGAGGAGGACGGGCACAATGACAACTCAGATGGAAAGCAAGATGA CAGCAAAGAAGATCTGCCAGTAACGAGAAAGCGAAAACGACATGCTATTGAAGGCAACAA AAAGAGTTCCAAGAAGCAGTTTCCAAACGACATGATCTTCAGTGCGATCGCCTCCATGTT CCCTGAGAACGGCGTCCCGGATGACATGAAGGAGAGGTATCGAGAACTCACAGAGATGTC AGACCCCAACGCTCTTCCCCCTCAGTGCACCCCCAACATCGATGGCCCCAATGCCAAGTC CGTGCAGCGGGAGCAGTCTCTGCACTCCTTCCACACACTTTTCTGCCGGCGCTGCTTTAA ATACGACTGCTTCCTTCATCCTTTTCATGCCACCCCTAATGTATATAAACGCAAGAACAA AGAAATCAAGATTGAGCCAGAGCCATGTGGCACAGACTGCTTCCTTTTGCTGGAAGGAGC AAAGGAGTACGCCATGCTCCACAACCCTCGCTCCAAGTGCTCAGGGCGTCGCCGGCGAAG GCACCACGTGGTCAGCGCTTCCTGCTCCAACACTTCAGCCTCTGCTGTGGCTGAGACTAA AGAAGGGGACAGTGACAGGGACACTGGCAATGACTGGGCCTCCAGTTCTTCAGAGGCTAA TTCTCGCTGTCAGACCCCCACAAAGCAGAAAGCTAGTCCAGCCCCACCTCAGCTCTGCGT AGTGGAAGCGCCCTCAGAGCCCGTGGAGTGGACCGGGGCTGAAGAATCTCTTTTTCGAGT CTTCCATGGCACCTACTTTTCACATTTCTGTTCTATAGCTAGGCTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCGGGATGGAGGCTGAGCATTTGTTTTGCCTTTGAGTCTTGCCATTCCTCTGAAGAAC AGAAGACACTTATAAAACTCTACACTTTGCCTTGCACTCTATAAGCAAAATGGATATACA AAATCCCCCAACTTCCAAATGTATCACATACTGGAAGAGAAAAGTTAAATCTGAATACAT GCGACTTCGGCAGCTTAAACGGCTTCAGGCAAATATGGGTGCAAAGGCTCTATATGTAGC AAATTTTGCAAAAGTTCAAGAAAAAACCCAGATCCTCAATGAAGAATGGAAGAAGCTTCG TGTCCAACCTGTTCAGTTGATGAAGCCCGTGAGTGGGCATCCTTTTCTCAAAAAGTGTAC CATAGAGAGCATTTTCCCGGGATTTGCAAGCCAGCATATGTTAATGAGGTCTCTGAACAC AGTTGCATTGGTTCCCATCATGTATTCCTGGTCCCCTCTTCAGCAGAACTTTACGGTAGA AGATGAGACCGTTTTGTGCAATATTCCCTACATGGGCGATGAGGTGAAGGAAGAAGATGA GACTTTCATTGAGGAGCTGATCAATAACTACGATGGCAAAGTCCATGGTGAAGAAGAGAT GATTCCTGGCTCTGTGCTGATTAGTGATGCTGTTTTCCTGGAGTTGGTAGATGCTCTGAA TCAATACTCGGATGAGGAGGAGGACGGGCACAATGACAACTCAGATGGAAAGCAAGATGA CAGCAAAGAAGATCTGCCAGTAACGAGAAAGCGAAAACGACATGCTATTGAAGGCAACAA AAAGAGTTCCAAGAAGCAGTTTCCAAACGACATGATCTTCAGTGCGATCGCCTCCATGTT CCCTGAGAACGGCGTCCCGGATGACATGAAGGAGAGGTATCGAGAACTCACAGAGATGTC AGACCCCAACGCTCTTCCCCCTCAGTGCACCCCCAACATCGATGGCCCCAATGCCAAGTC CGTGCAGCGGGAGCAGTCTCTGCACTCCTTCCACACACTTTTCTGCCGGCGCTGCTTTAA ATACGACTGCTTCCTTCATCCTTTTCATGCCACCCCTAATGTATATAAACGCAAGAACAA AGAAATCAAGATTGAGCCAGAGCCATGTGGCACAGACTGCTTCCTTTTGCTGGAAGGAGC AAAGGAGTACGCCATGCTCCACAACCCTCGCTCCAAGTGCTCAGGGCGTCGCCGGCGAAG GCACCACGTGGTCAGCGCTTCCTGCTCCAACACTTCAGCCTCTGCTGTGGCTGAGACTAA AGAAGGGGACAGTGACAGGGACACTGGCAATGACTGGGCCTCCAGTTCTTCAGAGGCTAA TTCTCGCTGTCAGACCCCCACAAAGCAGAAAGCTAGTCCAGCCCCACCTCAGCTCTGCGT AGTGGAAGCGCCCTCAGAGCCCGTGGAGTGGACCGGGGCTGAAGAATCTCTTTTTCGAGT CTTCCATGGCACCTACTTTTCACATTTCTGTTCTATAGCTAGGCTTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1196-1313, - strand, RNAz p=0.898303 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1196-1313, - strand, RNAz p=0.898303 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 225-360, gnl|bosTau2|chr19 (38990785-38990919) | |
| 225-360, gnl|Hg17|chr17 (38133309-38133175) | |
| 225-360, gnl|Mm7|chr11 (101326164-101326030) | |
| 595-774, gnl|bosTau2|chr19 (38995632-38995811) | |
| 595-774, gnl|Hg17|chr17 (38125995-38125816) | |
| 595-774, gnl|Mm7|chr11 (101319764-101319585) | |
| 875-1038, gnl|bosTau2|chr19 (38997902-38998065) | |
| 875-1038, gnl|canFam2|chr9 (23596450-23596289) | |
| 875-1038, gnl|danRer3|chr3 (32774628-32774477) | |
| 875-1038, gnl|dasNov1|scaffold_37155 (43585-43444) | |
| 875-1038, gnl|echTel1|scaffold_112104 (1059-893) | |
| 875-1038, gnl|fr1|chrUn (22803859-22804017) | |
| 875-1038, gnl|galGal2|chr27_random (174351-174191) | |
| 875-1038, gnl|hg17|chr17 (38123960-38124125) | |
| 875-1038, gnl|Hg17|chr17 (38124163-38124000) | |
| 875-1038, gnl|loxAfr1|scaffold_30398 (7614-7449) | |
| 875-1038, gnl|mm7|chr11 (101317124-101317288) | |
| 875-1038, gnl|Mm7|chr11 (101317326-101317163) | |
| 875-1038, gnl|monDom2|scaffold_18 (53222167-53222332) | |
| 875-1038, gnl|oryCun1|scaffold_206438 (656-495) | |
| 875-1038, gnl|panTro1|chr19 (41309850-41310015) | |
| 875-1038, gnl|rheMac2|chr16 (52841287-52841452) | |
| 875-1038, gnl|rn3|chr10 (90242874-90243038) | |
| 875-1038, gnl|tetNig1|chr3 (12444086-12444216) | |
| 875-1038, gnl|xenTro1|scaffold_92 (911449-911312) | |
| 1128-1313, gnl|bosTau2|chr19 (39002429-39002614) | |
| 1128-1313, gnl|canFam2|chr9 (23600287-23600098) | |
| 1128-1313, gnl|danRer3|chr3 (32777059-32776891) | |
| 1128-1313, gnl|dasNov1|scaffold_9958 (59028-59218) | |
| 1128-1313, gnl|echTel1|scaffold_274116 (2201-2012) | |
| 1128-1313, gnl|galGal2|chr27_random (175940-175751) | |
| 1128-1313, gnl|hg17|chr17 (38118748-38118937) | |
| 1128-1313, gnl|Hg17|chr17 (38118938-38118753) | |
| 1128-1313, gnl|loxAfr1|scaffold_30398 (9801-9612) | |
| 1128-1313, gnl|mm7|chr11 (101312798-101312984) | |
| 1128-1313, gnl|Mm7|chr11 (101312985-101312800) | |
| 1128-1313, gnl|monDom2|scaffold_18 (53198112-53198301) | |
| 1128-1313, gnl|oryCun1|scaffold_206438 (5568-5379) | |
| 1128-1313, gnl|panTro1|chr19 (41304446-41304635) | |
| 1128-1313, gnl|rheMac2|chr16 (52836274-52836463) | |
| 1128-1313, gnl|rn3|chr10 (90238070-90238256) | |
| 1128-1313, gnl|xenTro1|scaffold_92 (912509-912331) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 225-360, gnl|bosTau2|chr19 (38990785-38990919) | |
| 225-360, gnl|Hg17|chr17 (38133309-38133175) | |
| 225-360, gnl|Mm7|chr11 (101326164-101326030) | |
| 595-774, gnl|bosTau2|chr19 (38995632-38995811) | |
| 595-774, gnl|Hg17|chr17 (38125995-38125816) | |
| 595-774, gnl|Mm7|chr11 (101319764-101319585) | |
| 875-1038, gnl|bosTau2|chr19 (38997902-38998065) | |
| 875-1038, gnl|canFam2|chr9 (23596450-23596289) | |
| 875-1038, gnl|danRer3|chr3 (32774628-32774477) | |
| 875-1038, gnl|dasNov1|scaffold_37155 (43585-43444) | |
| 875-1038, gnl|echTel1|scaffold_112104 (1059-893) | |
| 875-1038, gnl|fr1|chrUn (22803859-22804017) | |
| 875-1038, gnl|galGal2|chr27_random (174351-174191) | |
| 875-1038, gnl|hg17|chr17 (38123960-38124125) | |
| 875-1038, gnl|Hg17|chr17 (38124163-38124000) | |
| 875-1038, gnl|loxAfr1|scaffold_30398 (7614-7449) | |
| 875-1038, gnl|mm7|chr11 (101317124-101317288) | |
| 875-1038, gnl|Mm7|chr11 (101317326-101317163) | |
| 875-1038, gnl|monDom2|scaffold_18 (53222167-53222332) | |
| 875-1038, gnl|oryCun1|scaffold_206438 (656-495) | |
| 875-1038, gnl|panTro1|chr19 (41309850-41310015) | |
| 875-1038, gnl|rheMac2|chr16 (52841287-52841452) | |
| 875-1038, gnl|rn3|chr10 (90242874-90243038) | |
| 875-1038, gnl|tetNig1|chr3 (12444086-12444216) | |
| 875-1038, gnl|xenTro1|scaffold_92 (911449-911312) | |
| 1128-1313, gnl|bosTau2|chr19 (39002429-39002614) | |
| 1128-1313, gnl|canFam2|chr9 (23600287-23600098) | |
| 1128-1313, gnl|danRer3|chr3 (32777059-32776891) | |
| 1128-1313, gnl|dasNov1|scaffold_9958 (59028-59218) | |
| 1128-1313, gnl|echTel1|scaffold_274116 (2201-2012) | |
| 1128-1313, gnl|galGal2|chr27_random (175940-175751) | |
| 1128-1313, gnl|hg17|chr17 (38118748-38118937) | |
| 1128-1313, gnl|Hg17|chr17 (38118938-38118753) | |
| 1128-1313, gnl|loxAfr1|scaffold_30398 (9801-9612) | |
| 1128-1313, gnl|mm7|chr11 (101312798-101312984) | |
| 1128-1313, gnl|Mm7|chr11 (101312985-101312800) | |
| 1128-1313, gnl|monDom2|scaffold_18 (53198112-53198301) | |
| 1128-1313, gnl|oryCun1|scaffold_206438 (5568-5379) | |
| 1128-1313, gnl|panTro1|chr19 (41304446-41304635) | |
| 1128-1313, gnl|rheMac2|chr16 (52836274-52836463) | |
| 1128-1313, gnl|rn3|chr10 (90238070-90238256) | |
| 1128-1313, gnl|xenTro1|scaffold_92 (912509-912331) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |