Non-Coding RNA Search

Ss1.1-rpigca_1387.5

Sequence:


               
               TGAAGAAAGAGCTGGCCCAGGCTGAGGATGAGTTGGATGAGGCCCACAACCAGACACGGA
AGCTGCAGCGGTCGCTGGATGAGCAGACGGAGCAGAGCGAGAACCTGCAGGTGCAGCTGG
AGCATGTGCAGTCCAGGCTCCGCAGGCAGCAGCAGAGCGCCCCTCTCTTTGGGAAGATCC
GCAGTGCTCGCTTTGGTGCCGAGGAGGCGGGGGACGGAGCCAGCGACCTGGACGAGGATG
AAGACCTGCAGATCCAGGTGGCCTAGACTCCCAGGGCTGGGCAGGACCGGCCCGGTGCCC
AGGCCCCCAAGTGCCCAGGCGGACCGGCCACTGGAACTGATGCAGCTGCCTGTGCTCACT
CTGGGAGCAGAGCCCGGTCTGCCATGGACGCCTCCCTTCTCCCCCACGGTGGGCCTCTGT
GACCCCACCTGACCTGCAGCCCATGGAAGGGAAGCCATGGCCGTGTTTTATATATAATAT
ATATATGTGCTGACGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT
CGAGACTAGTTCTCTCTCTCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGAAAGAGCTGGCCCAGGCTGAGGATGAGTTGGATGAGGCCCACAACCAGACACGGA
AGCTGCAGCGGTCGCTGGATGAGCAGACGGAGCAGAGCGAGAACCTGCAGGTGCAGCTGG
AGCATGTGCAGTCCAGGCTCCGCAGGCAGCAGCAGAGCGCCCCTCTCTTTGGGAAGATCC
GCAGTGCTCGCTTTGGTGCCGAGGAGGCGGGGGACGGAGCCAGCGACCTGGACGAGGATG
AAGACCTGCAGATCCAGGTGGCCTAGACTCCCAGGGCTGGGCAGGACCGGCCCGGTGCCC
AGGCCCCCAAGTGCCCAGGCGGACCGGCCACTGGAACTGATGCAGCTGCCTGTGCTCACT
CTGGGAGCAGAGCCCGGTCTGCCATGGACGCCTCCCTTCTCCCCCACGGTGGGCCTCTGT
GACCCCACCTGACCTGCAGCCCATGGAAGGGAAGCCATGGCCGTGTTTTATATATAATAT
ATATATGTGCTGACGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT
CGAGACTAGTTCTCTCTCTCTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               173-482, - strand, RNAz p=0.990557

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-482, - strand, RNAz p=0.990557

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               134-482, gnl|bosTau2|chr18 (21437857-21438208)
               

               
               134-482, gnl|Hg17|chr16 (56104286-56103966)
               

               
               134-482, gnl|Mm7|chr8 (93492438-93492106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-482, gnl|bosTau2|chr18 (21437857-21438208)
               

               
               134-482, gnl|Hg17|chr16 (56104286-56103966)
               

               
               134-482, gnl|Mm7|chr8 (93492438-93492106)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.239292)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)

	134-482, gnl\|bosTau2\|chr18 (21437857-21438208)
	134-482, gnl\|Hg17\|chr16 (56104286-56103966)
	134-482, gnl\|Mm7\|chr8 (93492438-93492106)