Non-Coding RNA Search

Ss1.1-rpigca_1982.5

Sequence:


               
               GAGAGCCAACCAGGGCCCGCACCGGCCGGGGCCGGGCTGGTTCGTCGGGTCTAGGAAGCC
CGGCAATGCCCCGCCACCGAGGGCCTCCCGGCCAGGGCCGCCCCAGGTGGGGCTGGGAGC
AGAGACTGGACAGCTTCTTGCGGGTCCCCAGCCTAAGGCTCCTGAGTATGGGCTTGGCAC
TGACCCTGGCCCTGTCTGACCCCCTGGTTTTCTGGGCTCCTGCTGGGGCTCATCCTCTTC
CCGCCCAAGGCCACCCCGCCAAGTTCAGTCGCATAGCGCCCCAGCTCCGGAAAGCCTTTG
GCTGGTGGAACCTCAGCTGTCCCGTCTGCAAAGGCCTGTTCACTGCCCTCGACCTCGGGC
TAAAGGAAGAGGTCAGTGTGGCCTGGTGGGCTCCGTTAGCCATCAAGGTGTGCAAGCTGC
TGAAAATCGCGCCGCCCGCCGTGTGCCAGTCCGTCGTCCGGCTCTTTGAGGACGACGTGG
TGGACGTGTGGACGCGCTCCGTGCTGCGCCCATCTGAGGCCTGCGGGCTGCTCGTGGGCT
CCTCCTGTGGGCACTGGGACATCTTTGAATCTTGGAACATCTCCCTGCCGCCCGTGCCAA
AGCCGCCCCCGCAGCCGCCCAGGCCCCCGGCCCCAGGCTCCCCCGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGCCAACCAGGGCCCGCACCGGCCGGGGCCGGGCTGGTTCGTCGGGTCTAGGAAGCC
CGGCAATGCCCCGCCACCGAGGGCCTCCCGGCCAGGGCCGCCCCAGGTGGGGCTGGGAGC
AGAGACTGGACAGCTTCTTGCGGGTCCCCAGCCTAAGGCTCCTGAGTATGGGCTTGGCAC
TGACCCTGGCCCTGTCTGACCCCCTGGTTTTCTGGGCTCCTGCTGGGGCTCATCCTCTTC
CCGCCCAAGGCCACCCCGCCAAGTTCAGTCGCATAGCGCCCCAGCTCCGGAAAGCCTTTG
GCTGGTGGAACCTCAGCTGTCCCGTCTGCAAAGGCCTGTTCACTGCCCTCGACCTCGGGC
TAAAGGAAGAGGTCAGTGTGGCCTGGTGGGCTCCGTTAGCCATCAAGGTGTGCAAGCTGC
TGAAAATCGCGCCGCCCGCCGTGTGCCAGTCCGTCGTCCGGCTCTTTGAGGACGACGTGG
TGGACGTGTGGACGCGCTCCGTGCTGCGCCCATCTGAGGCCTGCGGGCTGCTCGTGGGCT
CCTCCTGTGGGCACTGGGACATCTTTGAATCTTGGAACATCTCCCTGCCGCCCGTGCCAA
AGCCGCCCCCGCAGCCGCCCAGGCCCCCGGCCCCAGGCTCCCCCGTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q15495_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q15495_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               448-567, + strand, RNAz p=0.59299

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-567, + strand, RNAz p=0.59299

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-366, gnl|bosTau2|chr15 (28620386-28620755)
               

               
               1-366, gnl|Hg17|chr11 (6368336-6368723)
               

               
               1-366, gnl|Mm7|chr7 (101610885-101611259)
               


               
               370-648, gnl|bosTau2|chr15 (28621661-28621939)
               

               
               370-648, gnl|canFam2|chr21 (32903309-32903623)
               

               
               370-648, gnl|echTel1|scaffold_312694 (7795-7482)
               

               
               370-648, gnl|fr1|chrUn (130728476-130728783)
               

               
               370-648, gnl|hg17|chr11 (6369127-6369440)
               

               
               370-648, gnl|Hg17|chr11 (6369194-6369472)
               

               
               370-648, gnl|mm7|chr7 (101611590-101611893)
               

               
               370-648, gnl|Mm7|chr7 (101611647-101611925)
               

               
               370-648, gnl|monDom2|scaffold_43 (18789609-18789313)
               

               
               370-648, gnl|oryCun1|scaffold_188529 (3373-3070)
               

               
               370-648, gnl|panTro1|chr9 (6511188-6511501)
               

               
               370-648, gnl|rheMac2|chr14 (65811527-65811214)
               

               
               370-648, gnl|rn3|chr1 (163375174-163375477)
               

               
               370-648, gnl|tetNig1|chr7 (3209409-3209692)
               

               
               370-648, gnl|xenTro1|scaffold_1986 (11068-10772)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-366, gnl|bosTau2|chr15 (28620386-28620755)
               

               
               1-366, gnl|Hg17|chr11 (6368336-6368723)
               

               
               1-366, gnl|Mm7|chr7 (101610885-101611259)
               


               
               370-648, gnl|bosTau2|chr15 (28621661-28621939)
               

               
               370-648, gnl|canFam2|chr21 (32903309-32903623)
               

               
               370-648, gnl|echTel1|scaffold_312694 (7795-7482)
               

               
               370-648, gnl|fr1|chrUn (130728476-130728783)
               

               
               370-648, gnl|hg17|chr11 (6369127-6369440)
               

               
               370-648, gnl|Hg17|chr11 (6369194-6369472)
               

               
               370-648, gnl|mm7|chr7 (101611590-101611893)
               

               
               370-648, gnl|Mm7|chr7 (101611647-101611925)
               

               
               370-648, gnl|monDom2|scaffold_43 (18789609-18789313)
               

               
               370-648, gnl|oryCun1|scaffold_188529 (3373-3070)
               

               
               370-648, gnl|panTro1|chr9 (6511188-6511501)
               

               
               370-648, gnl|rheMac2|chr14 (65811527-65811214)
               

               
               370-648, gnl|rn3|chr1 (163375174-163375477)
               

               
               370-648, gnl|tetNig1|chr7 (3209409-3209692)
               

               
               370-648, gnl|xenTro1|scaffold_1986 (11068-10772)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.136314)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               clu (0.119646)

	1-366, gnl\|bosTau2\|chr15 (28620386-28620755)
	1-366, gnl\|Hg17\|chr11 (6368336-6368723)
	1-366, gnl\|Mm7\|chr7 (101610885-101611259)

	370-648, gnl\|bosTau2\|chr15 (28621661-28621939)
	370-648, gnl\|canFam2\|chr21 (32903309-32903623)
	370-648, gnl\|echTel1\|scaffold_312694 (7795-7482)
	370-648, gnl\|fr1\|chrUn (130728476-130728783)
	370-648, gnl\|hg17\|chr11 (6369127-6369440)
	370-648, gnl\|Hg17\|chr11 (6369194-6369472)
	370-648, gnl\|mm7\|chr7 (101611590-101611893)
	370-648, gnl\|Mm7\|chr7 (101611647-101611925)
	370-648, gnl\|monDom2\|scaffold_43 (18789609-18789313)
	370-648, gnl\|oryCun1\|scaffold_188529 (3373-3070)
	370-648, gnl\|panTro1\|chr9 (6511188-6511501)
	370-648, gnl\|rheMac2\|chr14 (65811527-65811214)
	370-648, gnl\|rn3\|chr1 (163375174-163375477)
	370-648, gnl\|tetNig1\|chr7 (3209409-3209692)
	370-648, gnl\|xenTro1\|scaffold_1986 (11068-10772)