Ss1.1-rpigca_2044.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGCCGGAGACCGTGGTCCCCCAGAGTGTCAGCACCCCTACCTCAGAGCCGGCTGTTGC CCGCTGTCAGCTGGACCCCGCCTTCCTGCCCTCTGTAACCTTGGGCCGCCGACATGGGCG ACCTGGAGCTACTGTTGCCCGGGGAGGCTGACGTACTAGTGCGGGGACTGCGCAGCTTCC AGATCCGCGAGATGGGCTCCGGAGGATACACCACGAAGCCTCCATCATTGGAGAAACTGA ACATGCAGGCCACCACAAGGAACTACAAAAGCAGGCAGAGCTGATGGAATTTGAGATTGC ACTGAAGGCCCTCTCGGTGCTGCGCTACATTACAGACTGTGTGGACAGCCTTTCCCTGAG CACCTTGAGCCGCATGCTCAGCACCCACAACCTACCCTGTCTCCTGGTGGAATTGCTGGA GCATAGTCCCTGGAGCCGGCAGGAAGGAGGCAAGCTGCAGCAATTTGAGAGTGGCCGTTG GCAGACAGTGCCCCCATCAGAGCAGCAAAAACTGAGCAAGTTGGATGGGCAGGTGTGGAT TGCCCTGTACAACCTGCTGCTAAGCCCCGAGGCCCGAGCCCACTATTGCCTCACCAGCTT TGCTAAAGGACAGCTACTCAAGCTTCAGGCATTCCTCACAGACACGCTGCTGGACCAGAT GCCCAACCTGGCAGACCTGCAGGGTTTCCTAGCCCACCTGGCCCTGGCCGAAGCCCAGCC CCCTAAGAAAGACCTGGTGTTGGAACAGATCCCAGAAATCTGGGAGCGGCTAGAGCAAGA GAACAAAGGCAAGTGGCAGGCTATTGCCAAGCACCAGCTGCAGCATATATTCAGCACCTC AGAGCAGGACCTGAGGCTGCAAGCACAAAGGTGGGCTGAGACCTACAGACTGGACGTGCT GGAGGCAGTGGCTCCAGAGCGACCCCGCTGTGCTTACTGCAGTGCAGAGGCCTCCAAGCG CTGCTCACGATGCCAGAATGAGTGGTACTGCTGCAGGGAGTGCCAAGTCAAGCACTGGGA AAAACATGGAAAGTCTTGTGTTGTGGCAGCCCAAGGTGACAGAGCCAAGTGAAGGATGCA GCTGCTGAGGGCCAACCACCATGCCATACAATCCACTAGAGTGTACCCCTGAACCTCTGG ATCTCGGCCTGGCCTCTGCAAGTGCCCCAGCCTCCCAGATGAGGAAGACAGCAGGAGGGA AGTGCTGCTGACCCATCTTCCCCAGCAAAGCCATCCCCACTTCCTGCCCCACCCGGCTTA GGGTGCAGCCTCAGCAAGCTGGGGAGAGAGGCCCTGGGCGGGGTTGTGGGGGTGAGAACC GGATGTGGGGACCCTCTTCCTTCAGTAAGTAAAGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGCCGGAGACCGTGGTCCCCCAGAGTGTCAGCACCCCTACCTCAGAGCCGGCTGTTGC CCGCTGTCAGCTGGACCCCGCCTTCCTGCCCTCTGTAACCTTGGGCCGCCGACATGGGCG ACCTGGAGCTACTGTTGCCCGGGGAGGCTGACGTACTAGTGCGGGGACTGCGCAGCTTCC AGATCCGCGAGATGGGCTCCGGAGGATACACCACGAAGCCTCCATCATTGGAGAAACTGA ACATGCAGGCCACCACAAGGAACTACAAAAGCAGGCAGAGCTGATGGAATTTGAGATTGC ACTGAAGGCCCTCTCGGTGCTGCGCTACATTACAGACTGTGTGGACAGCCTTTCCCTGAG CACCTTGAGCCGCATGCTCAGCACCCACAACCTACCCTGTCTCCTGGTGGAATTGCTGGA GCATAGTCCCTGGAGCCGGCAGGAAGGAGGCAAGCTGCAGCAATTTGAGAGTGGCCGTTG GCAGACAGTGCCCCCATCAGAGCAGCAAAAACTGAGCAAGTTGGATGGGCAGGTGTGGAT TGCCCTGTACAACCTGCTGCTAAGCCCCGAGGCCCGAGCCCACTATTGCCTCACCAGCTT TGCTAAAGGACAGCTACTCAAGCTTCAGGCATTCCTCACAGACACGCTGCTGGACCAGAT GCCCAACCTGGCAGACCTGCAGGGTTTCCTAGCCCACCTGGCCCTGGCCGAAGCCCAGCC CCCTAAGAAAGACCTGGTGTTGGAACAGATCCCAGAAATCTGGGAGCGGCTAGAGCAAGA GAACAAAGGCAAGTGGCAGGCTATTGCCAAGCACCAGCTGCAGCATATATTCAGCACCTC AGAGCAGGACCTGAGGCTGCAAGCACAAAGGTGGGCTGAGACCTACAGACTGGACGTGCT GGAGGCAGTGGCTCCAGAGCGACCCCGCTGTGCTTACTGCAGTGCAGAGGCCTCCAAGCG CTGCTCACGATGCCAGAATGAGTGGTACTGCTGCAGGGAGTGCCAAGTCAAGCACTGGGA AAAACATGGAAAGTCTTGTGTTGTGGCAGCCCAAGGTGACAGAGCCAAGTGAAGGATGCA GCTGCTGAGGGCCAACCACCATGCCATACAATCCACTAGAGTGTACCCCTGAACCTCTGG ATCTCGGCCTGGCCTCTGCAAGTGCCCCAGCCTCCCAGATGAGGAAGACAGCAGGAGGGA AGTGCTGCTGACCCATCTTCCCCAGCAAAGCCATCCCCACTTCCTGCCCCACCCGGCTTA GGGTGCAGCCTCAGCAAGCTGGGGAGAGAGGCCCTGGGCGGGGTTGTGGGGGTGAGAACC GGATGTGGGGACCCTCTTCCTTCAGTAAGTAAAGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 448-1324, - strand, RNAz p=0.989954 | |
| 472-588, + strand, RNAz p=0.626397 | |
| 746-864, - strand, RNAz p=0.792797 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 448-1324, - strand, RNAz p=0.989954 | |
| 472-588, + strand, RNAz p=0.626397 | |
| 746-864, - strand, RNAz p=0.792797 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-205, gnl|bosTau2|chr22 (38620821-38620621) | |
| 1-205, gnl|Hg17|chr3 (50358096-50357923) | |
| 1-205, gnl|Mm7|chr9 (107276819-107276996) | |
| 448-622, gnl|bosTau2|chr22 (38618083-38617909) | |
| 448-622, gnl|canFam2|chr20 (42013072-42012875) | |
| 448-622, gnl|danRer3|chrNA (118087185-118086991) | |
| 448-622, gnl|echTel1|scaffold_274637 (4356-4554) | |
| 448-622, gnl|fr1|chrUn (178162263-178162460) | |
| 448-622, gnl|galGal2|chr12 (1250168-1250369) | |
| 448-622, gnl|hg17|chr3 (50354824-50355022) | |
| 448-622, gnl|Hg17|chr3 (50355006-50354832) | |
| 448-622, gnl|loxAfr1|scaffold_33789 (19152-18957) | |
| 448-622, gnl|mm7|chr9 (107279505-107279306) | |
| 448-622, gnl|Mm7|chr9 (107279321-107279495) | |
| 448-622, gnl|monDom2|scaffold_5 (73930153-73929960) | |
| 448-622, gnl|panTro1|chr2 (51933986-51934184) | |
| 448-622, gnl|rheMac2|chr2 (86072605-86072407) | |
| 448-622, gnl|rn3|chr8 (112816769-112816572) | |
| 448-622, gnl|tetNig1|chr11 (4406121-4405938) | |
| 746-873, gnl|bosTau2|chr22 (38617451-38617324) | |
| 746-873, gnl|canFam2|chr20 (42013639-42013489) | |
| 746-873, gnl|danRer3|chrNA (118091007-118090871) | |
| 746-873, gnl|echTel1|scaffold_274637 (3903-4053) | |
| 746-873, gnl|fr1|chrUn (178161654-178161811) | |
| 746-873, gnl|galGal2|chr12 (1249658-1249779) | |
| 746-873, gnl|hg17|chr3 (50354222-50354372) | |
| 746-873, gnl|Hg17|chr3 (50354369-50354242) | |
| 746-873, gnl|mm7|chr9 (107280093-107279942) | |
| 746-873, gnl|Mm7|chr9 (107279943-107280070) | |
| 746-873, gnl|monDom2|scaffold_5 (73931797-73931645) | |
| 746-873, gnl|panTro1|chr2 (51933384-51933534) | |
| 746-873, gnl|rheMac2|chr2 (86073206-86073056) | |
| 746-873, gnl|rn3|chr8 (112817355-112817203) | |
| 746-873, gnl|tetNig1|chr11 (4406685-4406516) | |
| 1093-1356, gnl|bosTau2|chr22 (38617129-38616840) | |
| 1093-1356, gnl|Mm7|chr9 (107280338-107280753) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-205, gnl|bosTau2|chr22 (38620821-38620621) | |
| 1-205, gnl|Hg17|chr3 (50358096-50357923) | |
| 1-205, gnl|Mm7|chr9 (107276819-107276996) | |
| 448-622, gnl|bosTau2|chr22 (38618083-38617909) | |
| 448-622, gnl|canFam2|chr20 (42013072-42012875) | |
| 448-622, gnl|danRer3|chrNA (118087185-118086991) | |
| 448-622, gnl|echTel1|scaffold_274637 (4356-4554) | |
| 448-622, gnl|fr1|chrUn (178162263-178162460) | |
| 448-622, gnl|galGal2|chr12 (1250168-1250369) | |
| 448-622, gnl|hg17|chr3 (50354824-50355022) | |
| 448-622, gnl|Hg17|chr3 (50355006-50354832) | |
| 448-622, gnl|loxAfr1|scaffold_33789 (19152-18957) | |
| 448-622, gnl|mm7|chr9 (107279505-107279306) | |
| 448-622, gnl|Mm7|chr9 (107279321-107279495) | |
| 448-622, gnl|monDom2|scaffold_5 (73930153-73929960) | |
| 448-622, gnl|panTro1|chr2 (51933986-51934184) | |
| 448-622, gnl|rheMac2|chr2 (86072605-86072407) | |
| 448-622, gnl|rn3|chr8 (112816769-112816572) | |
| 448-622, gnl|tetNig1|chr11 (4406121-4405938) | |
| 746-873, gnl|bosTau2|chr22 (38617451-38617324) | |
| 746-873, gnl|canFam2|chr20 (42013639-42013489) | |
| 746-873, gnl|danRer3|chrNA (118091007-118090871) | |
| 746-873, gnl|echTel1|scaffold_274637 (3903-4053) | |
| 746-873, gnl|fr1|chrUn (178161654-178161811) | |
| 746-873, gnl|galGal2|chr12 (1249658-1249779) | |
| 746-873, gnl|hg17|chr3 (50354222-50354372) | |
| 746-873, gnl|Hg17|chr3 (50354369-50354242) | |
| 746-873, gnl|mm7|chr9 (107280093-107279942) | |
| 746-873, gnl|Mm7|chr9 (107279943-107280070) | |
| 746-873, gnl|monDom2|scaffold_5 (73931797-73931645) | |
| 746-873, gnl|panTro1|chr2 (51933384-51933534) | |
| 746-873, gnl|rheMac2|chr2 (86073206-86073056) | |
| 746-873, gnl|rn3|chr8 (112817355-112817203) | |
| 746-873, gnl|tetNig1|chr11 (4406685-4406516) | |
| 1093-1356, gnl|bosTau2|chr22 (38617129-38616840) | |
| 1093-1356, gnl|Mm7|chr9 (107280338-107280753) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.265604) | |
| ece (0.229305) | |
| clu (0.119646) |