Non-Coding RNA Search

Ss1.1-rpigca_2262.5

Sequence:


               
               GAGACCCTGGATCTGGAAGAGGCCGAGGGCGCCGTGGGCTACCAGCCCGAGTATTCCAAG
TTCTGCCGCATGAGCTACCAGGACCCGTCCCAGCTCTCGTGCCTGCCCTACCTGGAGCAC
GTGGGCCACAACCACACGTACAACATGGCGCCCAGCGCCCTGGACGCCGCCGACCTGCCG
CCGCCCGGCGCCCTCAAGAAGGGCAGCAAGGAGAAGCAGGCCGACTTCCTGGACAAGCAG
ATGAGCCGGGACGAGCACCGGGCCCGCGCCATGAAGATCCCCTTCACCAACGACAAGATC
ATCAACCTGCCGGTGGAGGAGTTCAACGAGCTGCTGTCCAAGTACCAGCTGAGCGAGGCG
CAGCTCAGCCTCATCCGCGACATCCGGCGGCGCGGCAAGAACAAGATGGCGGCGCAGAAC
TGCCGCAAGCGCAAGCTGGACACCATCCTCAACCTGGAGCGGGACGTGGAGGACCTGCAG
CGCGACAAGGCCCGCCTGCTGCGGGAGAAGGTGGAGTTCCTCCGCTCGCTGCGGCAGATG
AAGCAGAAGGTCCAGAGCCTGTACCAGGAGGTGTTCGGGCGGCTGCGGGATGAGAACGGG
CGGCCCTACTCGCCCAGCCAGTACGCGCTCCAGTACGCGGGCGACGGCAGCGTCCTCCTC
ATTCCCCGCACCTTGGCCGACCATCAGGCGCGGCGGCAGGAGAGGAAGCCGAAGGACCGG
AGGAAGTGAGCCCGGGCAGCCAGGGGGGTTGACGCTCACCGAGACGGAAACTGGAGAAGG
GCTGGGCCTGGACCTGGACCTCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACCCTGGATCTGGAAGAGGCCGAGGGCGCCGTGGGCTACCAGCCCGAGTATTCCAAG
TTCTGCCGCATGAGCTACCAGGACCCGTCCCAGCTCTCGTGCCTGCCCTACCTGGAGCAC
GTGGGCCACAACCACACGTACAACATGGCGCCCAGCGCCCTGGACGCCGCCGACCTGCCG
CCGCCCGGCGCCCTCAAGAAGGGCAGCAAGGAGAAGCAGGCCGACTTCCTGGACAAGCAG
ATGAGCCGGGACGAGCACCGGGCCCGCGCCATGAAGATCCCCTTCACCAACGACAAGATC
ATCAACCTGCCGGTGGAGGAGTTCAACGAGCTGCTGTCCAAGTACCAGCTGAGCGAGGCG
CAGCTCAGCCTCATCCGCGACATCCGGCGGCGCGGCAAGAACAAGATGGCGGCGCAGAAC
TGCCGCAAGCGCAAGCTGGACACCATCCTCAACCTGGAGCGGGACGTGGAGGACCTGCAG
CGCGACAAGGCCCGCCTGCTGCGGGAGAAGGTGGAGTTCCTCCGCTCGCTGCGGCAGATG
AAGCAGAAGGTCCAGAGCCTGTACCAGGAGGTGTTCGGGCGGCTGCGGGATGAGAACGGG
CGGCCCTACTCGCCCAGCCAGTACGCGCTCCAGTACGCGGGCGACGGCAGCGTCCTCCTC
ATTCCCCGCACCTTGGCCGACCATCAGGCGCGGCGGCAGGAGAGGAAGCCGAAGGACCGG
AGGAAGTGAGCCCGGGCAGCCAGGGGGGTTGACGCTCACCGAGACGGAAACTGGAGAAGG
GCTGGGCCTGGACCTGGACCTCGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9XSV2_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9XSV2_CANFA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-801, gnl|bosTau2|chr19 (31093233-31092434)
               

               
               1-801, gnl|Hg17|chr17 (43491274-43492080)
               

               
               1-801, gnl|Mm7|chr11 (96928943-96928149)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-801, gnl|bosTau2|chr19 (31093233-31092434)
               

               
               1-801, gnl|Hg17|chr17 (43491274-43492080)
               

               
               1-801, gnl|Mm7|chr11 (96928943-96928149)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-801, gnl\|bosTau2\|chr19 (31093233-31092434)
	1-801, gnl\|Hg17\|chr17 (43491274-43492080)
	1-801, gnl\|Mm7\|chr11 (96928943-96928149)