Non-Coding RNA Search

Ss1.1-rpigcb_0120.5

Sequence:


               
               GGAAATGCTCTTCTAAATGTTGTCTTGAAAAGTCAGCCTCTAGTGCCACGAGAGAACATC
ACAGCATGGATGAATGCAATTGGATTGATCATCACTGCCCTACCAGAGCCATATTGGATT
GTCCTTCATGATCGAATTGTGAGTGTTATCAGCAGCCCCAGCTTGACCTCTGAGACAGAG
TGGGTCGGCTATCCATTCCGCCTCTTTGATTTCACTGCTTGTCATCAGTCTTACTCTGAG
ATGAGCTGTAGCTACACGTTAGCTCTGGCACATGCTGTGTGGCACCATTCCAGCATTGGG
CAACTTTCTCTCATTCCCAAATTTCTCACTGAAGTACTTCTTCCTATAGTGAAAACTGAG
TTCCAGTTGCTTTATGTGTACCATCTTGTGGGACCATTTTTACAAAGATTTCAGCAAGAG
AGAACTCGATGTATGATAGAGATTGGTGTGGCCTTTTATGACATGTTGCTGAATGTAGAC
CAGTGTAGCACCCACTTAAACTACATGGATCCTATCTGTGACTTCCTGTATCACATGAAG
TATATGTTCACTGGCGACAGTGTGAAAGAGCAAGTAGAGAAGATTATCTGTAATTTAAAA
CCAGCTTTAAAACTTCGTCTTCGATTCATCACTCACATCAGCAAGATGGAGCCAGCTGCA
GTGCCTCCACAAGCCATCAGTAGTGGGTCTCCAGCACCGCAGTCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAATGCTCTTCTAAATGTTGTCTTGAAAAGTCAGCCTCTAGTGCCACGAGAGAACATC
ACAGCATGGATGAATGCAATTGGATTGATCATCACTGCCCTACCAGAGCCATATTGGATT
GTCCTTCATGATCGAATTGTGAGTGTTATCAGCAGCCCCAGCTTGACCTCTGAGACAGAG
TGGGTCGGCTATCCATTCCGCCTCTTTGATTTCACTGCTTGTCATCAGTCTTACTCTGAG
ATGAGCTGTAGCTACACGTTAGCTCTGGCACATGCTGTGTGGCACCATTCCAGCATTGGG
CAACTTTCTCTCATTCCCAAATTTCTCACTGAAGTACTTCTTCCTATAGTGAAAACTGAG
TTCCAGTTGCTTTATGTGTACCATCTTGTGGGACCATTTTTACAAAGATTTCAGCAAGAG
AGAACTCGATGTATGATAGAGATTGGTGTGGCCTTTTATGACATGTTGCTGAATGTAGAC
CAGTGTAGCACCCACTTAAACTACATGGATCCTATCTGTGACTTCCTGTATCACATGAAG
TATATGTTCACTGGCGACAGTGTGAAAGAGCAAGTAGAGAAGATTATCTGTAATTTAAAA
CCAGCTTTAAAACTTCGTCTTCGATTCATCACTCACATCAGCAAGATGGAGCCAGCTGCA
GTGCCTCCACAAGCCATCAGTAGTGGGTCTCCAGCACCGCAGTCCAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13529596|gb|AAH05508.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13529596|gb|AAH05508.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-320, + strand, RNAz p=0.607548

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-320, + strand, RNAz p=0.607548

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               106-320, gnl|bosTau2|chr9 (40025537-40025323)
               

               
               106-320, gnl|Hg17|chr6 (131954360-131954146)
               

               
               106-320, gnl|Mm7|chr10 (24661291-24661505)
               


               
               429-576, gnl|bosTau2|chr9 (40023552-40023405)
               

               
               429-576, gnl|Hg17|chr6 (131952447-131952295)
               

               
               429-576, gnl|Mm7|chr10 (24663379-24663526)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-320, gnl|bosTau2|chr9 (40025537-40025323)
               

               
               106-320, gnl|Hg17|chr6 (131954360-131954146)
               

               
               106-320, gnl|Mm7|chr10 (24661291-24661505)
               


               
               429-576, gnl|bosTau2|chr9 (40023552-40023405)
               

               
               429-576, gnl|Hg17|chr6 (131952447-131952295)
               

               
               429-576, gnl|Mm7|chr10 (24663379-24663526)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fty (0.17584)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

	106-320, gnl\|bosTau2\|chr9 (40025537-40025323)
	106-320, gnl\|Hg17\|chr6 (131954360-131954146)
	106-320, gnl\|Mm7\|chr10 (24661291-24661505)

	429-576, gnl\|bosTau2\|chr9 (40023552-40023405)
	429-576, gnl\|Hg17\|chr6 (131952447-131952295)
	429-576, gnl\|Mm7\|chr10 (24663379-24663526)